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Protein Overview: SPAC2F3.10

General Information:
Name(s) found: SPAC2F3.10 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • GARP complex subunit Vps54 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 949 amino acids

    Gene Ontology:
    Cellular Component: GARP complex [ISSLink to PubMed article]
    endosome [IEA]
    cytoplasm [IDALink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    extrinsic to membrane [IEA]
    Biological Process: vesicle-mediated transport [ISSLink to PubMed article]
    retrograde transport, endosome to Golgi [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Golgi to vacuole transport [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERISSAPSI SLGYPPTESS AHLAPSFSDS ATSTLSFKSL LEDPVNPIRP VYTPTRTEIT  60
   61 PVTLSPIPIT PVREFQPYLH EISQEYARYS KQKRASLRRY LEKHGKLEGS MKESSINGSL 120
  121 LRRSSVSTIL RPASESSYPN SNSETITYDI DDNVNPSSSL VDNFSISSVP SVFFQSDFNL 180
  181 DDPQIFDVVS EHIDITQTSD APNSNRNLLL NNSMLQEKIS WYLDTVELHL LQEIENASDS 240
  241 FPMIIDNLKQ LKKETRDNVE ETKHLLEKLT EVNVMCDRHM DAISSEELAC HQLTQLKKVV 300
  301 QTLEDIYSEH KKVSEDVKDQ RFLEAINGIN SIVTQLKKKS TELNVDLLSL PSVKSLREEH 360
  361 KVLYHTVSQS VVQQFSKFLT SDMHKFSTIL DSNELKDIYL SKNRLIPSVT KSLPSAMEFD 420
  421 ADFLHEVDVC IDCLTLTDSL QAALTLYKTA VFEAFENLAQ QYFTDGVEMR SVRKSSDLRR 480
  481 SLSAASLSSL SDSSRRSSSA ANPFQSMSIT EFAEMLTNIY FSSLECLRRI RSQIKVLIDI 540
  541 LSKKDTKQYH LSVILNDLMA TSSDVVTQQV TTINNLRFRV LDTYPPNNVI YLFSLHIIFH 600
  601 NELESLCGIT QSSFIPTIMR QLLDWFKNFQ RYSTQKLASS FERELWEAIP VEPSCQDLAN 660
  661 RVFECSGNTP VEWTRLLSPE AEKEDENHRV HHVKVSEDCT ATVSFGKQSL HIVRSSVTLL 720
  721 ETLDDYGKLL AHFSRLAPEF QTGMLDMFRT LNSRVYQLIL GAGTVRSSGL SKVLGKHIAL 780
  781 ASQTIALFQL SLNSMCRYLS RVTGTRLTNE TNKLDQDFTV HHLQIHDKFV SLMRERVAIS 840
  841 CSQIASLSWD IDSPHGYIID LSKSLIKLYK VLHRYSQRDC VEVIPDVIRM FEDRLQLELT 900
  901 DIARNPSKWP GVRIDLSYFY DMMASKCGYA GDRTLLEKFE RTPEQQEAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] deduced N/A No confident structure predictions are available.
    2 View Details [183..624] PSI-BLAST 20.69897 Heavy meromyosin subfragment
    3 View Details [625..689] deduced N/A No confident structure predictions are available.
    4 View Details [690..949] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.54

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle