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Protein Overview: SPBC16A3.06

General Information:
Name(s) found: SPBC16A3.06 [Sanger Pombe]
Description(s) found:
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  • pir||T39546 probable double-stranded rna specific adenosine deaminase - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582139|sp|O42912.1|TAD1_SCHPO RecName: Full=tRNA-specific adenosine deaminase 1; AltName: Full=tRNA-specific adenosine-37 deaminase [NCBI NR]
  • gi|2842505|emb|CAA16857.1| tRNA specific adenosine deaminase (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113575|ref|NP_596783.1| tRNA specific adenosine deaminase (predicted) (PMID 9707437) [Schizosaccharomyces pombe] [NCBI NR]
  • tRNA specific adenosine deaminase [Sanger Pombe]
  • tRNA-specific adenosine deaminase 1 OS=Schizosaccharomyces pombe GN=SPBC16A3.06 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE.: O42912; [pompepVF.fasta]
  • Putative double-stranded rna specific adenosine deaminase [pompep4896]
  • |||putative tRNA specific adenosine deaminase (PMID 9707437) [pompepnew.fasta]
  • SPBC16A3.06 protein [4896.FASTAC]
  • |||tRNA specific adenosine deaminase (predicted) (PMID 9707437)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative double-stranded rna specific adenosine deaminase. [Schizosaccharomyces pombe]gi|2842505|emb|CAA16857.1| SPBC16A3.06 [Schizosaccharomyces pombe]gi|7492552|pir||T39546 probable double-stranded rna specific adenosine deaminase - fission yeast (Sch [nrdb_11152004_Chlamydomonas]
  • |||tRNA specific adenosine deaminase |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O42912) Putative double-stranded rna specific adenosine deaminase [pompep4896_normal_reversed]
  • SPBC16A3.06 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC16A3.06 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • tRNA-specific adenosine deaminase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3.06 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 388 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: tRNA modification [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    RNA binding [IEA]
    tRNA-specific adenosine deaminase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEFTLDRNS NVGNLIALAV LNKFDELARH GKPIIRANGV REWTTLAGVV IQKKMENEFI  60
   61 CVCLATGVKC TPAGIIKNEQ LGSVLHDCHA EILALRCFNR LLLEHCILIK ESKKDTWLLE 120
  121 VADNGKFTLN SNLLIHLYVS ECPCGDASME LLASRLENNK PWNLTVDSEK LMRGRADFGL 180
  181 LGIVRTKPGR PDAPVSWSKS CTDKLAAKQY LSILNSQTSL ICEPIYLSCV VLYKKVIVKS 240
  241 AIDRAFGPFG RCAPLAEFGE KDNPYYFHPF TVLETDENFL YSRPLNQAEK TATSTNVLIW 300
  301 IGDKMQCTQV IHNGIKAGTK AKDVEKSQTL ICRKSMMNLL HQLSQSLTNE KNYYEWKKLN 360
  361 IKRCQQKQIL RNILKNWIPN GGNEFQWI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..388] PSI-BLAST 121.0 Crystal structure of the catalytic domain of an adenosine deaminase that acts on RNA (hADAR2) bound to inositol hexakisphosphate (IHP)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle