YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16A3.06
Organism:	Schizosaccharomyces pombe
Length:	388 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16A3.06.

Description	E-value	Query Range	Subject Range
gi\|27357042 - gi\|27357042\|gb\|AAN86547.1\| adenosine deaminase [Takifugu rubripes]	448.0	[0..4]	[387..364]
gi\|15529506, gi\|... - gi\|53127005\|emb\|CAG31002.1\| hypothetical protein [Gallus gallus], gi\|45383650\|ref\|NP_989571.1\| RNA-s...	441.0	[0..4]	[387..316]
gi\|68366904 - gi\|68366904\|ref\|XP_687110.1\| PREDICTED: similar to adenosine deaminase [Danio rerio]	437.0	[0..4]	[387..480]
gi\|148230009, gi... - gi\|54648473\|gb\|AAH84960.1\| LOC495438 protein [Xenopus laevis], gi\|148230009\|ref\|NP_001088561.1\| aden...	433.0	[0..4]	[387..314]
gi\|74001569 - gi\|74001569\|ref\|XP_544931.2\| PREDICTED: similar to RNA-specific adenosine deaminase B1 isoform DRAD...	433.0	[0..4]	[387..360]
gi\|22506829 - gi\|22506829\|gb\|AAM97654.1\| adenosine deaminase ADAR2 variant [Homo sapiens]	431.0	[0..4]	[387..315]

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Predicted Domain #1

Region A:
Residues: [1-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEFTLDRNS NVGNLIALAV LNKFDELARH GKPIIRANGV REWTTLAGVV IQKKMENEFI  60
   61 CVCLATGVKC TPAGIIKNEQ LGSVLHDCHA EILALRCFNR LLLEHCILIK ESKKDTWLLE 120
  121 VADNGKFTLN SNLLIHLYVS ECPCGDASME LLASRLENNK PWNLTVDSEK LMRGRADFGL 180
  181 LGIVRTKPGR PDAPVSWSKS CTDKLAAKQY LSILNSQTSL ICEPIYLSCV VLYKKVIVKS 240
  241 AIDRAFGPFG RCAPLAEFGE KDNPYYFHPF TVLETDENFL YSRPLNQAEK TATSTNVLIW 300
  301 IGDKMQCTQV IHNGIKAGTK AKDVEKSQTL ICRKSMMNLL HQLSQSLTNE KNYYEWKKLN 360
  361 IKRCQQKQIL RNILKNWIPN GGNEFQWI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	121.0
Match:	1zy7A
Description:	Crystal structure of the catalytic domain of an adenosine deaminase that acts on RNA (hADAR2) bound to inositol hexakisphosphate (IHP)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits