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Protein Overview: SPBC1711.16

General Information:
Name(s) found: SPBC1711.16 [Sanger Pombe]
Description(s) found:
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  • gi|7630174|emb|CAB88246.1| WD repeat protein (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|74698330|sp|Q9P775.1|YBEG_SCHPO RecName: Full=Uncharacterized WD repeat-containing protein C17D11.16 [NCBI NR]
  • gi|19112681|ref|NP_595889.1| WD repeat protein Pwp1 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • WD repeat protein Pwp1 [Sanger Pombe]
  • Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe GN=SPBC1711.16 PE=1 SV=1 [Swiss-Prot]
  • WD REPEAT PROTEIN: Q9P775; [pompepVF.fasta]
  • WD repeat protein, periodic tryptophan protein 1 homolog [pompep4896]
  • |||WD repeat protein [pompepnew.fasta]
  • SPBC1711.16 protein [4896.FASTAC]
  • |||WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • WD repeat protein; periodic tryptophan protein 1 homolog [Schizosaccharomyces pombe]gi|7630174|emb|CAB88246.1| SPBC1711.16 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • (Q9P775) WD repeat protein, periodic tryptophan protein 1 homolog [pompep4896_normal_reversed]
  • |||WD repeat protein |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC1711.16 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC1711.16 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |||WD repeat protein Pwp1 |Schizosaccharomyces pombe|chr 2|||Manual [spombe-190209-contam.fasta]
  • Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 516 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVSSVAFV PRGYASEFPK SYDIDEIEYE RINQLSKLKL EDARADLQSS MEDSNKANGN  60
   61 GEETTDGAEG VLQTSEEVDD ELKVYNLDTY DDDEEEAETE GPAAMFSNIR GLAYHENGEK 120
  121 DPYITIDPQE QDDLEREEMQ ILPTDSLLLA ARTEDNLSHV EVYVYEPTEE NLYVHHDFLL 180
  181 PTFPLCLEWL DYKVGTSDNA PGNYVAVGTF DPEIEIWDLD IIDAVYPAAV LGAGASQVNK 240
  241 KKKKSKKIND SYHTDAVLAL SSNRNAHNLL VSGSADTTLK LWDLSTCNCV KSFTYHSDKV 300
  301 SCLDWYSKAP SVLLSGSYDK TAKIADLRLE EAPSSFQVTS DVENVAWDQH SENNFFIGTD 360
  361 NGIVYYCDAR NLSKSVWQLQ AHDGPISCLS VNPSVPSFVA TGSTDRVVKL WNTSDSSPKM 420
  421 VVSRDLDVGR VFTCSFTTDE STAFHLAASG SKGVVRVWDT ATNPGVRKAF ESRVTEEVTK 480
  481 KERIVQLEDR GAGEDSSDDD DYEDIEDDDD QDAEMS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..459] PSI-BLAST 33.221849 Cdc4 F-box and linker domains; Cdc4 propeller domain
    2 View Details [460..516] PSI-BLAST 49.522879 No description for 2ovpB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.68

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle