YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1711.16
Organism:	Schizosaccharomyces pombe
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1711.16.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	411.0	[0..2]	[509..1173]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	400.0	[0..3]	[509..866]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	394.0	[0..4]	[508..568]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	389.0	[0..4]	[503..161]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	387.0	[0..3]	[509..1046]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	373.0	[0..2]	[508..649]

Back

Predicted Domain #1

Region A:
Residues: [1-459]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVSSVAFV PRGYASEFPK SYDIDEIEYE RINQLSKLKL EDARADLQSS MEDSNKANGN  60
   61 GEETTDGAEG VLQTSEEVDD ELKVYNLDTY DDDEEEAETE GPAAMFSNIR GLAYHENGEK 120
  121 DPYITIDPQE QDDLEREEMQ ILPTDSLLLA ARTEDNLSHV EVYVYEPTEE NLYVHHDFLL 180
  181 PTFPLCLEWL DYKVGTSDNA PGNYVAVGTF DPEIEIWDLD IIDAVYPAAV LGAGASQVNK 240
  241 KKKKSKKIND SYHTDAVLAL SSNRNAHNLL VSGSADTTLK LWDLSTCNCV KSFTYHSDKV 300
  301 SCLDWYSKAP SVLLSGSYDK TAKIADLRLE EAPSSFQVTS DVENVAWDQH SENNFFIGTD 360
  361 NGIVYYCDAR NLSKSVWQLQ AHDGPISCLS VNPSVPSFVA TGSTDRVVKL WNTSDSSPKM 420
  421 VVSRDLDVGR VFTCSFTTDE STAFHLAASG SKGVVRVWD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.221849
Match:	1nexB
Description:	Cdc4 F-box and linker domains; Cdc4 propeller domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [460-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TATNPGVRKA FESRVTEEVT KKERIVQLED RGAGEDSSDD DDYEDIEDDD DQDAEMS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits