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Protein Overview: SPCC417.09c

General Information:
Name(s) found: SPCC417.09c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • transcription factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 767 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    integral to membrane [IEA]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHARMQPHED RSRSGMSRSE AMELEDQLEE EERGGNVVVG SSSANANAST AETGKKSAGG  60
   61 SKPKRRRGER IPPSKRIRKA IAYVNKYASG CFGRVERRLV CTRSISRHSN QKLLDFCVEC 120
  121 KKHKIKCVGN FPCGRCLKKG LECVIETPPR LLMNKDEISL NLQRLSHMET ILSKLMPSMS 180
  181 LDLPSLEAKI AELSESLQTY PDKVLTDIEL GSYQQVTLNE TQTYYEDAGS NESFVARVHE 240
  241 IICQGREFQV QHKLTNKGNK TFEDILDPAD NTVASLIHAL PPKDITFYLL MTFWQFSSDN 300
  301 NHFYYNTKLF AAKVHHLFDD PTSFQSKDGG FVCMLLLSMA MGSLFSYIRH PEFLSDENHD 360
  361 RWTYPGSQFY QNAKLLFPKV ISESSLETVQ SFFLAGMYLS PTLAHEVVYM YFGIAMRAAV 420
  421 ANGMHKKSAN AQFSGDVAEL RKRLFWSVYC MERKIGISLG RPESLVRSEI DIHFPEYRES 480
  481 LDSQNFIASF RTFTLAIKIS LLTNKVYDMW YSSLHGKANL KAATIKEIVN EIEAWRQQLS 540
  541 PDLEIQNIGP DSRSYRGIVH LHLAYHIVRI AMGRPFLLHR LRERTMNSKT DEGARLLTDK 600
  601 LISYCYSSAL HIVDLLVLLR MHKFLSVYSF MDYHSCHAAS FIILVHLLIN PSEQTIEQLN 660
  661 TAIDILNFVT DRFPLLKGST DVITNLRAFA EQSEVYQSRL NATEPAYSTQ VPFFPRDADY 720
  721 HNQINLQNLW NDENINASLE ALFNDAKGFG FLLPADNFIF PSDDGDM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] deduced N/A No confident structure predictions are available.
    2 View Details [107..222] FFAS03 2.21 PPR1
    3 View Details [223..280] deduced N/A No confident structure predictions are available.
    4 View Details [281..464] MSA 3.362995 View MSA. No confident structure predictions are available.
    5 View Details [465..565] deduced N/A No confident structure predictions are available.
    6 View Details [566..767] MSA 2.261995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  4.34861813464065 bayes_pls_golite062009
  • DNA binding
    		•  4.03985756894684 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.97978190843512 bayes_pls_golite062009
  • transcription factor activity
    		•  2.87348461329489 bayes_pls_golite062009
  • binding
    		•  2.82809978070212 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.80191339934741 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.67344049333457 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.50774349911815 bayes_pls_golite062009
  • transcription activator activity
    		•  0.822069987038721 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.36

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle