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Protein Overview: SPBC776.17

General Information:
Name(s) found: SPBC776.17 [Sanger Pombe]
Description(s) found:
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  • pir||T40688 hypothetical protein SPBC776.17 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582972|sp|O94683.1|RRP7_SCHPO RecName: Full=Ribosomal RNA-processing protein 7 [NCBI NR]
  • gi|4176534|emb|CAA22890.1| rRNA processing protein Rrp7 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113125|ref|NP_596333.1| rRNA processing protein Rrp7 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • rRNA processing protein Rrp7 [Sanger Pombe]
  • Ribosomal RNA-processing protein 7 OS=Schizosaccharomyces pombe GN=rrp7 PE=2 SV=1 [Swiss-Prot]
  • POSSIBLY INVOLVED IN PRE-RRNA PROCESSING AND RIBOSOME ASSEMBLY; SIMILAR TO S. CEREVISIAE RRP7: O94683; [pompepVF.fasta]
  • PUTATIVE PROTEIN INVOLVED IN PRE-RRNA PROCESSING AND RIBOSOME ASSEMBLY; BY SIMILARITY TO YEAST RRP7: O94683; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||possibly involved in pre-rRNA processing and ribosome assembly [pompepnew.fasta]
  • SPBC776.17 protein [4896.FASTAC]
  • |||involved in rRNA processing (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|4176534|emb|CAA22890.1| SPBC776.17 [Schizosaccharomyces pombe]gi|7491735|pir||T40688 hypothetical protein SPBC776.17 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||involved in rRNA processing |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O94683) Hypothetical protein [pompep4896_normal_reversed]
  • |||rRNA processing protein Rrp7 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC776.17 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC776.17 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 254 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    rRNA processing [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLKEKGFV KLEIYLENKK RLHSIFLKED TEDVEKKSLY LINVPITTTE KILKRAISQL  60
   61 GGRIVNIYPN ISGLLKSGTH LRVKLVEPAE VKQVIKAASK KTTSLPWKFT QHTGLKRKNM 120
  121 VIIFLEILMC LIGYVESYDR QFVNPRVLAE SVDSYMKRVT KKEIAEKRRL FAMKNQPDED 180
  181 GFVTVVRSGR APVGRPQDAE RQLEKKKDTG IHKDFYRFQL REKKKKALLD LAHKFEFDKQ 240
  241 RIQQLKEKRQ FKPY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..254] FFAS03 2.35 Poly(A)-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.32086587430292 bayes_pls_golite062009
  • binding
    		•  2.84652855524974 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.07488701626356 bayes_pls_golite062009
    		• 1.23676130179002 bayes_pls_golite062009
  • structural molecule activity
    		•  1.11870738570663 bayes_pls_golite062009
  • protein binding
    		•  0.826837409443725 bayes_pls_golite062009
  • mRNA binding
    		•  0.132944695780323 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.67

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle