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Protein Overview: SPBC25H2.16c

General Information:
Name(s) found: SPBC25H2.16c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • adaptin [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 533 amino acids

    Gene Ontology:
    Cellular Component: trans-Golgi network [ISSLink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    Biological Process: intracellular protein transport [ICLink to PubMed article]
    Golgi to vacuole transport [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAKRRLYS LIQNATEPYA FEPDLAVNLD IADLINQTGG NLPREAAFAI VRKVNDRNPT  60
   61 VAYLALNLLD ICVKNCGYAF RLQIASKEFL NELVRRFPER PPSRLNKIQV MILSLIEEWR 120
  121 KTICRVDRYK EDLGFIRDMH RLLSYKGYTF PEIDKENLAV LSQKSVLKTA EELEKEDREA 180
  181 MSAKLQELIR RGTPADLAEA NKLMKVMAGY DTEQKQKYKE HVLVDLEKVK RKAALFGEML 240
  241 NEVSESDKLA SGDLYDELAY SLKAAQRKVD KILEEMSPED DSYVTVSDLK SLIASLLTQY 300
  301 DHLLEGDFSS ARTVAADNNS LLQATTESAK SNSKTSANAS NTQSAMDLLI DLDIGSDAQS 360
  361 PSLPASSSQM PTSSFNMESL SQSLLGTVEA PAEVGAISLT ESFNSPVSNS SPNVPINNFT 420
  421 STCAFENSHL NFQITPKSKT RDQVVLLATY TNLSPYDTVE NLQSFIAVPK KYNLVLQPQS 480
  481 GTNLSPLQKD GIYQEMIVTK LLDVTELPVR FKLTYKVNGR SQEYTGQSSI RLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..350] PSI-BLAST 50.30103 AP1 clathrin adaptor core
    2 View Details [351..533] PSI-BLAST 31.0 Gamma1-adaptin domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • protein binding
    		•  1.57801165255065 bayes_pls_golite062009
  • binding
    		•  1.4853299341494 bayes_pls_golite062009
  • transporter activity
    		•  0.169557557237959 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle