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Protein Overview: SPCC1020.08

General Information:
Name(s) found: SPCC1020.08 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • wybutosine biosynthesis protein Tyw1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 688 amino acids

    Gene Ontology:
    Cellular Component: membrane [RCALink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Biological Process: wybutosine biosynthetic process [ISSLink to PubMed article]
    tRNA modification [ISSLink to PubMed article]
    Molecular Function: FMN binding [IEA]
    iron ion binding [IEA]
    oxidoreductase activity [IEA]
    4 iron, 4 sulfur cluster binding [IEA]
    iron-sulfur cluster binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYSLGYIGE HWEEYRAVLY IVLLLPVLIH FLIRRKTQLS NSDKSSEKKD EVKKQREVKR  60
   61 FKRVGKRGKI GSPSSSIRKQ NDTIDWKNSP LCVFYSTLGG TAERYAKQVH EELSSLLQRD 120
  121 DIQLLNLDYV DLSEYFVSCP ENAIYLVVLP SYEIESSIDY YLSSLQESFS DFRVPKDPLH 180
  181 GLSGYAVFGL GDMENYPGDK FCYQAIQADK WIKKLGARRL APLGVVNTQL APTAQIDALL 240
  241 QWTRSVAECL KNGTLLKIGN TDSLSSDVMD VEDMGSMMAK AKAEAALPVG TKEMVSTESP 300
  301 TYKALTKQGY SVVGSHSGVK ICRWTKSAMR GRGFCYKYSF YGIRSHLCME ATPSLACANK 360
  361 CTFCWRHGTN PVGTSWRWKV DPPEMILQGI LKAHYAKLKL MKGVPGVLPD RYEEASRVRH 420
  421 CALSLVGEPI FYPYINEFVS MLHEREISSF LVTNAQHPEA LRNMGMVTQL YVSVDASTKQ 480
  481 SLKSVDRPLF KDFWERMLTC LEILREKRQR TVYRMTLVKG FNMEQIKEYT ELIRLGVPCF 540
  541 IEVKGVTYSG NSDQSPLTMK NVPYYEEVID FVKKLIEYID IHLQDLGVRY EIAAEHAHSC 600
  601 SILVAQTAFK KDGHWHTHID YPKFFELIRT KKDFGPFDYM ASTPDFAMFG NGGFSPEDTR 660
  661 FHRKKKTQTS KPISATISET ATISEAAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] PSI-BLAST 7.522879 No description for 1zoaA was found.
    2 View Details [89..341] PSI-BLAST 39.69897 NADPH-cytochrome p450 reductase; NADPH-cytochrome p450 reductase, N-terminal domain
    3 View Details [342..688] PSI-BLAST 40.69897 Structure of the S-adenosylmethionine dependent Enzyme MoaA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  0.62629924591908 bayes_pls_golite062009
  • binding
    		•  0.523120840489436 bayes_pls_golite062009
  • catalytic activity
    		•  0.275631658558537 bayes_pls_golite062009
    3
    Term Confidence Notes
  • catalytic activity
    		•  1.48331922124015 bayes_pls_golite062009
  • transferase activity
    		•  0.685192555939835 bayes_pls_golite062009
  • binding
    		•  0.60397276396442 bayes_pls_golite062009
  • protein binding
    		•  0.124485878765261 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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