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Protein Overview: rbp28

General Information:
Name(s) found: rbp28 / SPAC2C4.11c [Sanger Pombe]
Description(s) found:
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  • pir||T38522 conserved protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74581955|sp|O14044.1|PNO1_SCHPO RecName: Full=Pre-rRNA-processing protein pno1; AltName: Full=Ribosomal RNA-processing protein 28 [NCBI NR]
  • gi|2414622|emb|CAB16371.1| RNA-binding protein Rbp28 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115426|ref|NP_594514.1| RNA-binding protein Rbp28 [Schizosaccharomyces pombe] [NCBI NR]
  • RNA-binding protein Rbp28 [Sanger Pombe]
  • Pre-rRNA-processing protein pno1 OS=Schizosaccharomyces pombe GN=rbp28 PE=1 SV=1 [Swiss-Prot]
  • CONSERVED PROTEIN; SIMILAR TO S. CEREVISIAE YOR145B WHICH PURIFIES AS PART OF NUCLEAR PORE COMPLEX: O14044; [pompepVF.fasta]
  • CONSERVED HYPOTHETICAL PROTEIN; YEAST HOMOLOGUE YOR145B PURIFIES AS PART OF NUCLEAR PORE COMPLEX: O14044; [pompepV13]
  • Conserved hypothetical protein [pompep4896]
  • |||conserved protein [pompepnew.fasta]
  • SPAC2C4.11c protein [4896.FASTAC]
  • |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • conserved hypothetical protein [Schizosaccharomyces pombe]gi|2414622|emb|CAB16371.1| SPAC2C4.11c [Schizosaccharomyces pombe]gi|7490390|pir||T38522 conserved protein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |rbp28||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O14044) Conserved hypothetical protein [pompep4896_normal_reversed]
  • hypothetical protein SPAC2C4.11c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC2C4.11c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 258 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAPTAAVNV TNEGENGMFS PKFSLNYSLT TVSDNVMIDT TRGEIEFSDS AVNGTMDIEG  60
   61 APKFAPAKTS AEKKRGAKPQ MRRVPIPPHR MTPLRNVWPK LYPPLVEHLL LQVRMNTKSR 120
  121 SVELRESKAT KDPGALQKGM DFVQAFALGF DIDDAIALLR LDDLYIDTFE IKDVKTLQGD 180
  181 HLSRAIGRIA GQGGKTKFAI ENASRTRIVL ADSKIHILGG FTNIRIAKDA VVSLILGSPP 240
  241 GKVYANLRNA AARAKERI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..67] deduced N/A No confident structure predictions are available.
    2 View Details [68..258] PSI-BLAST 29.39794 Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  4.49437316734899 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.68444148122352 bayes_pls_golite062009
  • binding
    		•  2.8667878224392 bayes_pls_golite062009
  • mRNA binding
    		•  2.83121485081867 bayes_pls_golite062009
  • protein binding
    		•  1.56382009529204 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.43703138180882 bayes_pls_golite062009
  • DNA binding
    		•  1.20852534725468 bayes_pls_golite062009
    		• 0.559294837259864 bayes_pls_golite062009
  • transcription factor activity
    		•  0.386248501195543 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.32222928997178 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.1069917291606 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle