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Protein Overview: SPCC736.03c

General Information:
Name(s) found: SPCC736.03c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • phenylalanyl-tRNA synthetase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 429 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [ISSLink to PubMed article]
    Biological Process: tRNA processing [IEA]
    phenylalanyl-tRNA aminoacylation [ICLink to PubMed article]
    mitochondrial translation [RCALink to PubMed article]
    Molecular Function: magnesium ion binding [IEA]
    ATP binding [ISSLink to PubMed article]
    phenylalanine-tRNA ligase activity [ISSLink to PubMed article]
    tRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPHRVSHLS KLFSRRFPNW KRKVQTDSWS NVPEHIHSKI GRNLFQKEGH PICSLRQLLE  60
   61 QQFQKFEMNN VQKESPIVSV ETNFDSLGFP KTHVSRSKSD TYYMNNKTCL RTHTSAHQPE 120
  121 EFSRLAKEGF KKNGFLITAD VYRRDEVDSS HYPIFHQMEG ALVWNRNDTA KMKNDLKKVA 180
  181 LSPSLKSMVD DETTALETHN DMQDIYSLEE TKFVSQHLKD TLTTVIHDLV SLAPSISSGA 240
  241 EQVRYRWTYD SFPFTKPSFQ LEIDWKGKWL EILGCGVVQD RLLKGAGLNN YIGWAFGIGL 300
  301 ERLAMILYGI PDIRLFWSLD ERFSKQFLPN KISTFKPFSK YPACFKDIAF WINNDFNPND 360
  361 FYEIIRDVCQ DMVESVNLID QYTAKSGKTS LCYRVNYRSM ERSLRNEEID KLQEKLRNRV 420
  421 ANSLRVELR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..328] PSI-BLAST 53.522879 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
    2 View Details [329..429] FFAS03 3.89 Domains B1 and B5 of PheRS-beta, PheT; Domain B2 of PheRS-beta, PheT; Phenylalanyl-tRNA synthetase; Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain; B3/B4 domain of PheRS, PheT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phenylalanine-tRNA ligase activity
    		•  13.8919118344182 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  12.5698315343202 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  12.5698315343202 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  12.5592545638101 bayes_pls_golite062009
  • ligase activity
    		•  6.92073480193262 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.61548498770105 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.46505535069103 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.72324031407565 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.72215103383322 bayes_pls_golite062009
  • binding
    		•  0.966824335333342 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • RNA binding
    		•  0.524959231698733 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.375542987753806 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.281662799812287 bayes_pls_golite062009
  • protein binding
    		•  0.0804954454681041 bayes_pls_golite062009
  • DNA binding
    		•  0.0309732052586011 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.00572514744734753 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle