YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC244.02c

General Information:
Name(s) found: SPBC244.02c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • U3 snoRNP-associated protein Utp6 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 488 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cell division site [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IEA]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: maturation of SSU-rRNA [ISSLink to PubMed article]
    Molecular Function: snoRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKVQYYME QSVPELEDLL EKNIFNRDEI NNIIKTRRVF EEKLARRQVK LNDFLSYIQY  60
   61 EINLETLRAK RHKRLNITGK ITISDYAGPR KVLFLFLRAT NKFFGDVTLW LDYIHYAQKI 120
  121 KAVNIVGKIC VAALQKHPNN AELWVVACDH EFSINANVSA ARALMNRALR LNQENPVIWA 180
  181 AYFRLELSYM TKLFARSQIL TGNISSKTEN ITNGVSEDTI GSLSSDTIQL PMVSMEEFLG 240
  241 SSSSEVRKND SDLNISDDIG NISSKEQQTQ KFANVLLQII LNSRKNLSLQ NYVGFFVSVL 300
  301 DALFECFDVP VVQYMYQENI IGICNEHFEH FKNESGEIYG VLLHRWCFLE IFIKLRGAYP 360
  361 SNDSGISGKG IFGLKKNDPR ITSMVLTDPG FVDDLQAIVE KYQSISSDFQ IPFKTKKIFY 420
  421 SFFVKTLHAI SSSSAAESSI ALALHMLVIN AFQSMEKLKI LTFDDSLQEI YKEAQIQSGT 480
  481 FMSNATLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..408] PSI-BLAST 60.39794 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    2 View Details [409..488] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.12690485191789 bayes_pls_golite062009
  • RNA binding
    		•  2.0770703064779 bayes_pls_golite062009
  • protein binding
    		•  1.39668540998298 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.26149030245805 bayes_pls_golite062009
  • DNA binding
    		•  0.9531600253493 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.93037889019021 bayes_pls_golite062009
  • transcription factor activity
    		•  0.374364600772076 bayes_pls_golite062009
  • ligase activity
    		•  0.102007806594868 bayes_pls_golite062009
  • signal sequence binding
    		•  0.0529781042891342 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle