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Protein Overview: SPBC800.13

General Information:
Name(s) found: SPBC800.13 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • histone H4 variant [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 479 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    condensed nuclear chromosome kinetochore [NAS]
    chromatin [RCALink to PubMed article]
    Biological Process: chromosome organization [ISS]
    chromosome segregation [NAS]
    kinetochore assembly [NAS]
    Molecular Function: DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHNYETPL KSSSFQHLVG TLSQRRHFTP SRSRYTPRSA QRTVTPHKRR ALARRNSLAR  60
   61 RRSNVFSATT PRDILRMLSR ALAKNPVPSP AESESSERRH TPQTNSQKSQ KTPRLSSNKR 120
  121 RTLKNDAKQR NSQSPGTDTS DANLTIQSIE APRRAPQRLS DFFTPDGRRV SNIRDSLISE 180
  181 KRLENNIDQV QESALSTASS NRLIDLKNDE VPIFRIPLSD YETDDMDDGT PLQRHVATLN 240
  241 QYQSPIFNLG PDILEDEPSY SSRASRSRQS SLSSRLSELP SKRASLEILR RENTFPADPI 300
  301 QEFGEKAYNE RELMEEISNF EPLLDDNLLE NANEAVNSPV VDAPMDADSA LEIPNDEDNG 360
  361 EILNKLKDSP FKKPKRRYSK SSTLVLPETN IRKLANSYSQ KKIAGSVIEE LTTASELFFK 420
  421 QIANDLSAFA DHAHRKTIDT QDVVLLMKRQ RKISEKKSLS SLMQQYLSRE IAPPAIKRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] MSA 1.017988 View MSA. No confident structure predictions are available.
    2 View Details [70..379] deduced N/A No confident structure predictions are available.
    3 View Details [380..479] PSI-BLAST 33.69897 Nuclear transcription factor Y subunit beta (Nf-Yb3)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle