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Protein Overview: SPAC644.09

General Information:
Name(s) found: SPAC644.09 [Sanger Pombe]
Description(s) found:
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  • gi|7708588|emb|CAB90136.1| alanine racemase (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|74625289|sp|Q9P6Q1.1|YKC9_SCHPO RecName: Full=UPF0001 protein C644.09 [NCBI NR]
  • gi|19114789|ref|NP_593877.1| alanine racemase [Schizosaccharomyces pombe] [NCBI NR]
  • alanine racemase [Sanger Pombe]
  • UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1 [Swiss-Prot]
  • UPF0001 FAMILY; PUTATIVE PROLINE SYNTHASE; PUTATIVE PYRIDOXAL PHOSPHATE COFACTOR: Q9P6Q1; [pompepVF.fasta]
  • CONSERVED HYPOTHETICAL UPF0001 FAMILY PROTEIN; PUTATIVE PROLINE SYNTHASE; PUTATIVE PYRIDOXAL PHOSPHATE COFACTOR: Q9P6Q1; [pompepV13]
  • Conserved hypothetical UPF0001 family protein [pompep4896]
  • |||UPF0001 family [pompepnew.fasta]
  • SPAC644.09 protein [4896.FASTAC]
  • |||UPF0001 family|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • conserved hypothetical UPF0001 family protein [Schizosaccharomyces pombe]gi|7708588|emb|CAB90136.1| SPAC644.09 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • (Q9P6Q1) Conserved hypothetical UPF0001 family protein [pompep4896_normal_reversed]
  • |||alanine racemase |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC644.09 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC644.09 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.09 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 237 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: cellular amino acid metabolic process [ISSLink to PubMed article]
    alanine metabolic process [RCALink to PubMed article]
    Molecular Function: pyridoxal phosphate binding [ISSLink to PubMed article]
    alanine racemase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIHSCLDL IRSQIQQSAN GRNVLLVAVS KFHPVETLME AYNAGQRHFG ENYMQEFLKK  60
   61 VELMPDDVQW HFIGSLQSSK CKKIASVKNL YSIETIDTEK KARLVNSARE ALQLPLNVYI 120
  121 QVNTSGEENK GGVTPSKVLE LCKQVQDMKY LRLKGLMTIG SISNSQLSDH NPDFQVLSDL 180
  181 RESLQNELGI PLQLSMGMSS DYLLAIKYGS DSVRVGSSIF GSRPTEKPSD VHISASK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..237] PSI-BLAST 34.221849 CRYSTAL STRUCTURE OF A YEAST HYPOTHETICAL PROTEIN-A STRUCTURE FROM BNL'S HUMAN PROTEOME PROJECT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • alanine racemase activity
    		•  2.62362449847897 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  2.31165775898309 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  2.17003836264776 bayes_pls_golite062009
  • catalytic activity
    		•  1.23611818854966 bayes_pls_golite062009
  • binding
    		•  1.14537370368371 bayes_pls_golite062009
  • diaminopimelate decarboxylase activity
    		•  0.492894938678183 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.328743179708914 bayes_pls_golite062009
  • lyase activity
    		•  0.320782640542698 bayes_pls_golite062009
  • protein binding
    		•  0.20402482036521 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.14065879331273 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle