YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: pab2

General Information:
Name(s) found: pab2 / SPBC16E9.12c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • poly(A) binding protein Pab2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 166 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    Biological Process: nuclear-transcribed mRNA poly(A) tail shortening [IMPLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    poly(A) RNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQDALDTQ EKELLEMKER VAEMEAEAAK LRAMQEQLDN ETEALRNDKE SIDAQSVYVG  60
   61 NVDYSVTPEE LQSHFASCGS VNRVTILCDK FTGHPKGFAY IEFSEPSLVP NALLLNGSML 120
  121 HERPLKVTPK RTNVPGMSRG RGRGRGRGRG RGRGGYRGRA RGFAPY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..166] PSI-BLAST 18.154902 CG8781 protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  5.15097136329571 bayes_pls_golite062009
  • mRNA binding
    		•  4.05281507540116 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.01211691099871 bayes_pls_golite062009
  • binding
    		•  3.05116833253954 bayes_pls_golite062009
    		• 2.24263873726102 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
  • protein binding
    		•  1.14508556628804 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  1.04854882388951 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009
  • hydrolase activity
    		•  0.153089401492248 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle