YRC Public Data Repository - Protein Structure Prediction

Protein:	pab2
Organism:	Schizosaccharomyces pombe
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pab2.

Description	E-value	Query Range	Subject Range
PABP8_ARATH - Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1	121.0	[0..4]	[165..271]
gi\|25470890, gi\|... - gi\|25470890\|ref\|NP_733829.1\| DAZ associated protein 1 isoform a [Homo sapiens], gi\|119589909\|gb\|EAW6...	121.0	[0..13]	[165..69]
gi\|114674409 - gi\|114674409\|ref\|XP_001147948.1\| PREDICTED: similar to DAZ associated protein 1 isoform 1 [Pan trogl...	121.0	[0..13]	[165..94]
gi\|55742017 - ref\|NP_001006737.1\| DAZ associated protein 1 [Xenopus tropicalis] gi\|55742017, gi\|... - gi\|55742017\|ref\|NP_001006737.1\| DAZ associated protein 1 [Xenopus (Silurana) tropicalis], gi\|4952245...	121.0	[0..13]	[165..69]
DAZP1_XENLA - DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1	121.0	[0..13]	[165..69]
gi\|13560783 - gi\|13560783\|gb\|AAK30205.1\|AF349964_1 poly(A)-binding protein [Daucus carota]	120.0	[0..4]	[165..266]
ROC4_NICSY - 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1	120.0	[0..1]	[137..184]
gi\|74195100, gi\|... - gi\|74195100\|dbj\|BAE28294.1\| unnamed protein product [Mus musculus], gi\|169790823\|ref\|NP_001116077.1\|...	119.0	[0..13]	[165..69]
gi\|68534156, gi\|... - gi\|71043670\|ref\|NP_001020913.1\| DAZ associated protein 1 [Rattus norvegicus], gi\|68534156\|gb\|AAH9893... gi\|148699628, gi... - gi\|169790818\|ref\|NP_573451.2\| DAZ associated protein 1 isoform a [Mus musculus], gi\|148699628\|gb\|EDL...	119.0	[0..13]	[165..69]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQDALDTQ EKELLEMKER VAEMEAEAAK LRAMQEQLDN ETEALRNDKE SIDAQSVYVG  60
   61 NVDYSVTPEE LQSHFASCGS VNRVTILCDK FTGHPKGFAY IEFSEPSLVP NALLLNGSML 120
  121 HERPLKVTPK RTNVPGMSRG RGRGRGRGRG RGRGGYRGRA RGFAPY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.154902
Match:	1hl6A
Description:	CG8781 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	5.15097136329571	bayes_pls_golite062009
mRNA binding	4.05281507540116	bayes_pls_golite062009
nucleic acid binding	4.01211691099871	bayes_pls_golite062009
binding	3.05116833253954	bayes_pls_golite062009
	2.24263873726102	bayes_pls_golite062009
single-stranded RNA binding	1.46469774223879	bayes_pls_golite062009
protein binding	1.14508556628804	bayes_pls_golite062009
transcription regulator activity	1.07788694919471	bayes_pls_golite062009
poly-pyrimidine tract binding	1.04854882388951	bayes_pls_golite062009
DNA binding	0.978604858165557	bayes_pls_golite062009
mRNA 3'-UTR binding	0.591700155096213	bayes_pls_golite062009
transcription factor activity	0.234742017105535	bayes_pls_golite062009
hydrolase activity	0.153089401492248	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: