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Protein Overview: SPAC644.16

General Information:
Name(s) found: SPAC644.16 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 422 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    mRNA cleavage factor complex [ISSLink to PubMed article]
    Biological Process: mRNA polyadenylation [ISSLink to PubMed article]
    mRNA cleavage [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSCVVYVG NIPYEMAEEQ VIDIFKQSGP VKSFQLVIDP ESGQPKGYGF CEYHDPATAA  60
   61 SAVRNLNNYD AGTRRLRVDF PTADQIRRLD KLLGPSRYGY YPQSYANQSY TYGNNFGSYP 120
  121 PTQPSTQPLP QSYGYPSYPP AGYRGGSARP SGVLANDEVY RVLAQLAPNE IDYMLSAIKA 180
  181 LCLEAPEQAA QLFETNPQLS YAVFQAMLMK RYTSESVVAD LLIPAGVNLP GAQEPNRGYF 240
  241 SPMHTYSSAV PGPISVPSAP YGRASSTIAE VSPMYGSHAA PYASTPSAAV GSSRGSTPAS 300
  301 ATVPISPARG FPTTSAYNPA PPAYGMANPA YGSTGIRSSS IPSSGSIRSP SLTTTSAQAT 360
  361 TNATNNITTT TAAQDENATK AALIAQLMAL TDDQINVLPP DQKERILQIR QALPSSYKTE 420
  421 SK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] PSI-BLAST 19.0 NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit
    2 View Details [85..198] deduced N/A No confident structure predictions are available.
    3 View Details [199..422] PSI-BLAST 5.522879 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  5.15097136329571 bayes_pls_golite062009
  • mRNA binding
    		•  4.05281507540116 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
    		• 3.4479220904723 bayes_pls_golite062009
  • binding
    		•  3.05116833253954 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  1.36691748240059 bayes_pls_golite062009
  • protein binding
    		•  1.14508556628804 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • snRNA binding
    		•  0.73428616955527 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle