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Protein Overview: SPBC3H7.04

General Information:
Name(s) found: SPBC3H7.04 [Sanger Pombe]
Description(s) found:
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  • pir||T40411 probable superoxide dismutase - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582431|sp|O74379.1|RT26B_SCHPO RecName: Full=Putative 37S ribosomal protein S26B, mitochondrial [NCBI NR]
  • gi|3417412|emb|CAA20300.1| mitochondrial ribosomal protein subunit S26 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112563|ref|NP_595771.1| mitochondrial ribosomal protein subunit S26 [Schizosaccharomyces pombe] [NCBI NR]
  • mitochondrial ribosomal protein subunit S26 [Sanger Pombe]
  • Putative 37S ribosomal protein S26B, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC3H7.04 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE SUPEROXIDE DISMUTASE: O74379; [pompepVF.fasta]
  • Putative superoxide dismutase [pompep4896]
  • |||putative superoxide dismutase [pompepnew.fasta]
  • SPBC3H7.04 protein [4896.FASTAC]
  • |||superoxide dismutase (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative superoxide dismutase [Schizosaccharomyces pombe]gi|3417412|emb|CAA20300.1| SPBC3H7.04 [Schizosaccharomyces pombe]gi|7493016|pir||T40411 probable superoxide dismutase - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||mitochondrial ribosomal subunit|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O74379) Putative superoxide dismutase [pompep4896_normal_reversed]
  • |||mitochondrial ribosomal protein subunit S26|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC3H7.04 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC3H7.04 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |||mitochondrial ribosomal protein subunit S26 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Putative 37S ribosomal protein S26B, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3H7.04 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 220 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    mitochondrial small ribosomal subunit [ISSLink to PubMed article]
    Biological Process: superoxide metabolic process [IEA]
    mitochondrial translation [RCALink to PubMed article]
    cellular response to stress [RCALink to PubMed article]
    translation [ISSLink to PubMed article]
    Molecular Function: structural constituent of ribosome [ISSLink to PubMed article]
    metal ion binding [IEA]
    superoxide dismutase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQQRFARA LDVGYKNFLS KDAVRNIFAY DNHLRGLVQK ECKIHQTPYR VPSDLMVQSA  60
   61 SDPARANLFN YSSQLVNHDF FFSGLISPER PSADADLGAI NLKPGIDASF GSFGELKSQM 120
  121 VDVGNSVFGD GWLWLVYSPE KSLFSLLCTY NASNAFLWGT GFPKFRTNAI VPLLCVNLWQ 180
  181 YAYLDDYGLN GKKMYITKWW DMINWTVVNN RFQATRIESL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..220] PSI-BLAST 73.0 Crystal Structure of Manganese Superoxide Dismutase from Deinococcus radiodurans

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • superoxide dismutase activity
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity, acting on superoxide radicals as acceptor
    		•  7.08472506566271 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  5.72997742104809 bayes_pls_golite062009
  • structural molecule activity
    		•  5.36636990455827 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.73079314406851 bayes_pls_golite062009
  • binding
    		•  1.73495523339859 bayes_pls_golite062009
  • protein binding
    		•  1.36581969443298 bayes_pls_golite062009
  • antioxidant activity
    		•  0.766723962166325 bayes_pls_golite062009
  • cation binding
    		•  0.485672227923388 bayes_pls_golite062009
  • metal ion binding
    		•  0.485672227923388 bayes_pls_golite062009
  • ion binding
    		•  0.480092270451566 bayes_pls_golite062009
  • catalytic activity
    		•  0.390489225704392 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle