YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3H7.04
Organism:	Schizosaccharomyces pombe
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3H7.04.

Description	E-value	Query Range	Subject Range
gi\|227177082, gi... - gi\|227553829\|ref\|ZP_03983878.1\| Mn superoxide dismutase [Enterococcus faecalis HH22], gi\|227177082\|g... SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=sodA PE=3 SV=1 SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1	280.0	[0..1]	[216..1]
gi\|29373127 - gi\|29373127\|gb\|AAO72712.1\| Mn superoxide dismutase [Melopsittacus undulatus]	279.0	[0..3]	[217..28]
gi\|94984937, gi\|... - gi\|94984937\|ref\|YP_604301.1\| superoxide dismutase [Deinococcus geothermalis DSM 11300], gi\|94555218\|...	279.0	[0..1]	[219..1]
gi\|147899555, gi... - gi\|34305125\|gb\|AAQ63483.1\| manganese superoxide dismutase [Xenopus laevis], gi\|147899555\|ref\|NP_0010...	279.0	[0..3]	[217..28]
gi\|3320377 - gi\|3320377\|gb\|AAC26483.1\| manganese superoxide dismutase [Vibrio alginolyticus]	277.0	[0..1]	[215..1]
gi\|89268255, gi\|... - gi\|89268255\|emb\|CAJ81602.1\| superoxide dismutase 2, mitochondrial [Xenopus tropicalis], gi\|54020900\|...	277.0	[0..3]	[217..28]
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	276.0	[0..1]	[218..1]
SODM_HORSE - Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1	276.0	[0..3]	[217..26]
SODM_MACFA - Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3	275.0	[0..3]	[217..26]
gi\|45383702, gi\|... - gi\|45383702\|ref\|NP_989542.1\| superoxide dismutase 2, mitochondrial [Gallus gallus], gi\|12034955\|gb\|A...	275.0	[0..3]	[217..28]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQQRFARA LDVGYKNFLS KDAVRNIFAY DNHLRGLVQK ECKIHQTPYR VPSDLMVQSA  60
   61 SDPARANLFN YSSQLVNHDF FFSGLISPER PSADADLGAI NLKPGIDASF GSFGELKSQM 120
  121 VDVGNSVFGD GWLWLVYSPE KSLFSLLCTY NASNAFLWGT GFPKFRTNAI VPLLCVNLWQ 180
  181 YAYLDDYGLN GKKMYITKWW DMINWTVVNN RFQATRIESL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1y67A
Description:	Crystal Structure of Manganese Superoxide Dismutase from Deinococcus radiodurans
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	7.08472506566271	bayes_pls_golite062009
structural constituent of ribosome	5.72997742104809	bayes_pls_golite062009
structural molecule activity	5.36636990455827	bayes_pls_golite062009
oxidoreductase activity	2.73079314406851	bayes_pls_golite062009
binding	1.73495523339859	bayes_pls_golite062009
protein binding	1.36581969443298	bayes_pls_golite062009
antioxidant activity	0.766723962166325	bayes_pls_golite062009
cation binding	0.485672227923388	bayes_pls_golite062009
metal ion binding	0.485672227923388	bayes_pls_golite062009
ion binding	0.480092270451566	bayes_pls_golite062009
catalytic activity	0.390489225704392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: