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Protein Overview: vps5

General Information:
Name(s) found: vps5 / SPCPJ732.01 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • retromer complex subunit Vps5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 576 amino acids

    Gene Ontology:
    Cellular Component: nuclear membrane [IDALink to PubMed article]
    endosome [IMPLink to PubMed article][ISSLink to PubMed article]
    prospore membrane [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    retromer complex [IMPLink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: ascospore formation [IGILink to PubMed article][IMPLink to PubMed article]
    intracellular protein transport [IMPLink to PubMed article]
    retrograde transport, endosome to Golgi [IMPLink to PubMed article]
    Molecular Function: phosphoinositide binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGHNIYEED DAFNPFADSV SPLNPPKTDQ EPSAEGVEEE SPNVQASPPK THIYTSPRKR  60
   61 SVNLKSLPFE TLTLDSAPLG PLQFSDAPSM APENNRLEVG LNTKINPLKG SSPALNADFS 120
  121 ANKPWISEVN SFSPSPIGAT ENPTIPNSEQ TVDTLDAASS SAPNFTHTVS SASSQKQGST 180
  181 SLTDTENQKA HPAAAPQSLT PFYIQVHDPH TVKEITKSHT VYSVSTRLEE HNQPSVSNVT 240
  241 VQRRYNDFAF LYQLLSNNHP GCIIPPIPEK QVVGRFDDEF IEQRRAALEV MLRKISAHPV 300
  301 LRDDYSFKLF LEAETFDPRM THRTTLIESS SSPLRSGPST SGLLDSFTSA FHTSGSSKFS 360
  361 EQDPILIEAK DTLDSLETQL KSVYHALLLS IDQRIQFASA IHDFGEAVGN LSLVDLEPTL 420
  421 SSKFDGLSQL QVELRFVQER KVAQDNLTLG TTLEEYIRYV ESAKNAFTTR QKLWQTWQSS 480
  481 VQAVSRAKTQ LEKCKKQAKS QQKSLPYLEE QYEKYRAKAA DLEKEFSEST TLLKRDLSSL 540
  541 TTSRVDDLKA SVETWLESAI ESQKEIIERW ESFLDQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] MSA 5.167996 View MSA. No confident structure predictions are available.
    2 View Details [191..576] PSI-BLAST 24.0 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle