YRC Public Data Repository - Protein Structure Prediction

Protein:	vps5
Organism:	Schizosaccharomyces pombe
Length:	576 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps5.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	208.0	[0..217]	[574..2346]
gi\|32405728, gi\|... - gi\|32405728\|ref\|XP_323477.1\| hypothetical protein ( (AL513463) related to VACUOLAR PROTEIN SORTING-A... gi\|85102219 - gi\|85102219\|ref\|XP_961293.1\| hypothetical protein ( (AL513463) related to VACUOLAR PROTEIN SORTING-A...	170.0	[0..18]	[576..14]
gi\|50757613 - gi\|50757613\|ref\|XP_415578.1\| PREDICTED: similar to myosin heavy chain [Gallus gallus]	163.0	[0..217]	[574..1299]
gi\|16944415 - gi\|16944415\|emb\|CAC28769.2\| related to VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS5 [Neurospora ... gi\|157071371, gi... - gi\|164426527\|ref\|XP_961293.2\| hypothetical protein NCU04137 [Neurospora crassa OR74A], gi\|157071371\|...	160.0	[0..18]	[576..14]
gi\|39977717, gi\|... - gi\|39977717\|ref\|XP_370246.1\| hypothetical protein MGG_06743 [Magnaporthe grisea 70-15], gb\|EAA55086....	157.0	[0..26]	[576..25]
gi\|109077219 - gi\|109077219\|ref\|XP_001096681.1\| PREDICTED: similar to sorting nexin associated golgi protein 1 [Mac...	155.0	[0..1]	[574..66]
gi\|76643953 - gi\|76643953\|ref\|XP_882544.1\| PREDICTED: similar to Myosin-8 (Myosin heavy chain, skeletal muscle, pe...	154.0	[0..217]	[574..1056]
gi\|88178619, gi\|... - gi\|88178619\|gb\|EAQ86087.1\| hypothetical protein CHGG_07340 [Chaetomium globosum CBS 148.51], gi\|1161...	152.0	[0..12]	[576..1]
gi\|74001171 - gi\|74001171\|ref\|XP_848967.1\| PREDICTED: similar to intersectin 1 isoform ITSN-l isoform 2 [Canis fam...	149.0	[0..18]	[572..95]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGHNIYEED DAFNPFADSV SPLNPPKTDQ EPSAEGVEEE SPNVQASPPK THIYTSPRKR  60
   61 SVNLKSLPFE TLTLDSAPLG PLQFSDAPSM APENNRLEVG LNTKINPLKG SSPALNADFS 120
  121 ANKPWISEVN SFSPSPIGAT ENPTIPNSEQ TVDTLDAASS SAPNFTHTVS SASSQKQGST 180
  181 SLTDTENQKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [191-576]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPAAAPQSLT PFYIQVHDPH TVKEITKSHT VYSVSTRLEE HNQPSVSNVT VQRRYNDFAF  60
   61 LYQLLSNNHP GCIIPPIPEK QVVGRFDDEF IEQRRAALEV MLRKISAHPV LRDDYSFKLF 120
  121 LEAETFDPRM THRTTLIESS SSPLRSGPST SGLLDSFTSA FHTSGSSKFS EQDPILIEAK 180
  181 DTLDSLETQL KSVYHALLLS IDQRIQFASA IHDFGEAVGN LSLVDLEPTL SSKFDGLSQL 240
  241 QVELRFVQER KVAQDNLTLG TTLEEYIRYV ESAKNAFTTR QKLWQTWQSS VQAVSRAKTQ 300
  301 LEKCKKQAKS QQKSLPYLEE QYEKYRAKAA DLEKEFSEST TLLKRDLSSL TTSRVDDLKA 360
  361 SVETWLESAI ESQKEIIERW ESFLDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits