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Protein Overview: SPBC365.10

General Information:
Name(s) found: SPBC365.10 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • actin-like protein Arp5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 721 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Ino80 complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [IPILink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIYAVREPV FSGPTPSFQN VSNDIPLVID NGSWQLRAGW GGEKDPKLVF DNLVSRYRDR  60
   61 KLSRTSTLVG NDTLIEVGSR SIARSPFERN VISNWDLMEQ VLDYTFLKLG IDRMEHPICM 120
  121 TEPLANPTYV RSTMTELLFE LYNAPSVAYG IDGLFSFYHN TKPSSSGIVL NLGNAASHVI 180
  181 PVLNGERILS EAKRISWGGS QSSSYLLKLF QIKYPSFPIK MLPSQAELLM HDHCHVSSDY 240
  241 THDIAHALDR DILERDEIVL QFPYTEAAAQ EKSQEELELI AERKRESGRR LQAQAAIKRK 300
  301 EKAAERDREL ATLTELQQQS LVLSRRAFQR ALEEAGFEDE SQLNAQVKNV QAKIRRAQRD 360
  361 QQRQEESEGS LDVTEIDVEQ AFPLLNVPDA ELDEAGLRQK RHQRLMKANY DARVRAKAEK 420
  421 AIEEAAEAER AEADERLRLE NFSTWVNEKR ETHKILLEKI SKNKRLKFEL NDRKSHASQM 480
  481 RMKSLATLAS EQPIQKRKRK DQSEDNFGAR DEDWKVYHDV LTAEQLEEER KKLLDQIYSL 540
  541 EKQLLEYDSQ FTQANTYDTL NDPRATLLYA FTRGVSDFDV NDVAQAFQLH LNVEQIRVPE 600
  601 VIFSPSIVGI DQAGILEIMR SILQRHSLEE QQKLVSNVLI TGGLGSLPGM ETRIKRELTS 660
  661 IMPVGSSINV FRASNPLLDA WKGASEWSVT EKFKAAKVTR EEYLEKGPEY IKEHSLGNIN 720
  721 S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..187] PSI-BLAST 114.0 Actin
    2 View Details [188..582] PSI-BLAST 14.0 Heavy meromyosin subfragment
    3 View Details [583..721] FFAS03 5.81 Actin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • actin binding
    		•  3.49917339467744 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  3.14961582364442 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.11425505645918 bayes_pls_golite062009
  • DNA helicase activity
    		•  2.92189100911743 bayes_pls_golite062009
  • myosin binding
    		•  2.53108346927043 bayes_pls_golite062009
  • actin filament binding
    		•  2.01821925799878 bayes_pls_golite062009
  • binding
    		•  1.97067859459221 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.59975673209166 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.59975673209166 bayes_pls_golite062009
  • protein binding
    		•  0.979596124775086 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.726191454623287 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.654083598964358 bayes_pls_golite062009
  • structural molecule activity
    		•  0.592226835455977 bayes_pls_golite062009
  • nucleosome binding
    		•  0.329990231856661 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.181830769846903 bayes_pls_golite062009
  • kinase activity
    		•  0.123127976437259 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0670632180760572 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  0.0571907728331915 bayes_pls_golite062009
  • chromatin binding
    		•  0.0424425838189793 bayes_pls_golite062009
  • 5'-3' DNA helicase activity
    		•  0.0183211661451317 bayes_pls_golite062009
  • ATP-dependent 5'-3' DNA helicase activity
    		•  0.0183211661451317 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle