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Protein Overview: SPBP8B7.09c

General Information:
Name(s) found: SPBP8B7.09c [Sanger Pombe]
Description(s) found:
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  • pir||T40803 probable pre-tRNA nuclear export receptor - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582827|sp|O94258.1|XPOT_SCHPO RecName: Full=Exportin-T; AltName: Full=tRNA exportin; AltName: Full=Exportin(tRNA); AltName: Full=Karyopherin-beta [NCBI NR]
  • gi|3810833|emb|CAA21794.1| karyopherin Los1 (exportin t) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113308|ref|NP_596516.1| karyopherin [Schizosaccharomyces pombe] [NCBI NR]
  • karyopherin [Sanger Pombe]
  • Exportin-T OS=Schizosaccharomyces pombe GN=los1 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE PRE-TRNA NUCLEAR EXPORT RECEPTOR: O94258; [pompepVF.fasta]
  • Putative pre-tRNA nuclear export receptor [pompep4896]
  • |||exportin t [pompepnew.fasta]
  • SPBP8B7.09c protein [4896.FASTAC]
  • |||exportin t|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative pre-tRNA nuclear export receptor [Schizosaccharomyces pombe]gi|3810833|emb|CAA21794.1| SPBP8B7.09c [Schizosaccharomyces pombe]gi|7492847|pir||T40803 probable pre-tRNA nuclear export receptor - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O94258) Putative pre-tRNA nuclear export receptor [pompep4896_normal_reversed]
  • |los1||karyopherin Los1 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBP8B7.09c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBP8B7.09c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |los1||karyopherin Los1|Schizosaccharomyces pombe|chr 2|||Manual [spombe-190209-contam.fasta]
  • |los1||karyopherin exportin T Los1 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Exportin-T OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=los1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 978 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear matrix [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    nuclear pore [RCALink to PubMed article]
    Biological Process: protein targeting [RCALink to PubMed article]
    tRNA export from nucleus [ISSLink to PubMed article]
    Molecular Function: GTP binding [NASLink to PubMed article]
    tRNA binding [ISSLink to PubMed article]
    Ran GTPase binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQDVENAV EAALDPSVGP IIKQQATDFI GSLRSSSTGW KICHEIFSEK TKYKPSTRLI  60
   61 CLQTLSEKVR EWNNESNLLE LQMIRDSVWS YIKELSFLDE PAYISNAVQH LLTLLFLQLY 120
  121 PSNWNDFFAS LQGVIAASSQ SEFSNFYLKV LLSIGDEIAD SLVLKTDVQI QKDNLVKDAI 180
  181 RANDMSDIVS FVYEMMLAYS NAKNYGTVGL CLQVYAQWVS WININLIVNE PCMNLLYSFL 240
  241 QIEELRCAAC ETMTEIVNKK MKPLEKLNLL NILNLNLFFS KSQEQSTDPN FDEHVAKLIN 300
  301 AQGVELVAIK SDPSELSPEL KENCSFQLYN LFPYLIRYLS DDYDETSTAV FPFLSDLLVS 360
  361 LRKESSSKEL SASLKEFLKS LLEAIIKKMK YDESQEWDDD PDSEEEAEFQ EMRKKLKIFQ 420
  421 DTINSIDSSL FSSYMYSAIT SSLSTAATLS PENSWQLIEF ALYETYIFGE GLRGPDAFFN 480
  481 EVDKSPTVLS QILALVTTSQ VCRHPHPLVQ LLYMEILVRY ASFFDYESAA IPALIEYFVG 540
  541 PRGIHNTNER VRPRAWYLFY RFVKSIKKQV VNYTESSLAM LGDLLNISVS PVTDMDAPVP 600
  601 TLNSSIRNSD FNSQLYLFET VGVLISSGNL TPEEQALYCD SLINALIGKA NAALSSDLSA 660
  661 LENIISVYCS LMAIGNFAKG FPARGSEEVA WLASFNKASD EIFLILDRMG FNEDIRGAVR 720
  721 FTSGRIINVV GPDMLPKVPQ LISILLNSID MNELVDVLSF ISQLIHIYKD NMMEITNRML 780
  781 PTLLMRIFSS LSAAPQGTDD AVKQNDLRKS YISFILQLLN KGFGSILFTE ENQVYFDPLI 840
  841 NSILHFANLV GEPATQKSSI ALVSKMVSLW GGKDGIAGFE NFTLSLTPLC FEMPVNPNFN 900
  901 TRDGQSLVVL GELAGLQKII LEKLGDIYKS YLVTVYFPTV NFPDVMASEY LQALSNLDSR 960
  961 SFKQFFQKFI QALKSGNV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..877] PSI-BLAST 92.69897 Karyopherin beta2
    2 View Details [878..978] PSI-BLAST 41.522879 Proteolytic fragment of CRM1 spanning six C-terminal HEAT repeats


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle