YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP8B7.09c
Organism:	Schizosaccharomyces pombe
Length:	978 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP8B7.09c.

Description	E-value	Query Range	Subject Range
gi\|94388676, gi\|... - gi\|94389728\|ref\|XP_988880.1\| PREDICTED: similar to tRNA exportin [Mus musculus], gi\|94388676\|ref\|XP_...	533.0	[0..1]	[974..1]
gi\|62652215, gi\|... - gi\|62652215\|ref\|XP_235185.3\| PREDICTED: similar to tRNA exportin [Rattus norvegicus], gi\|109481936\|r...	533.0	[0..1]	[974..1]
XPOT_EMENI - Exportin-T OS=Emericella nidulans GN=los1 PE=3 SV=1 XPOT_EMENI - Exportin-T OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=lo...	526.0	[0..4]	[975..3]
gi\|73968641 - gi\|73968641\|ref\|XP_531658.2\| PREDICTED: similar to tRNA exportin isoform 1 [Canis familiaris]	523.0	[0..1]	[974..1]
gi\|109097633 - gi\|109097633\|ref\|XP_001116910.1\| PREDICTED: similar to tRNA exportin [Macaca mulatta]	521.0	[0..1]	[974..1]
XPOT - exportin, tRNA (nuclear export receptor for tRNAs)	521.0	[0..1]	[974..1]
XPOT_PONAB - Exportin-T OS=Pongo abelii GN=XPOT PE=2 SV=1 XPOT_PONPY - Exportin-T - Pongo pygmaeus (Orangutan)	520.0	[0..1]	[974..1]
gi\|76660108 - gi\|76660108\|ref\|XP_615298.2\| PREDICTED: similar to tRNA exportin [Bos taurus]	514.0	[0..1]	[967..1]

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Predicted Domain #1

Region A:
Residues: [1-877]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQDVENAV EAALDPSVGP IIKQQATDFI GSLRSSSTGW KICHEIFSEK TKYKPSTRLI  60
   61 CLQTLSEKVR EWNNESNLLE LQMIRDSVWS YIKELSFLDE PAYISNAVQH LLTLLFLQLY 120
  121 PSNWNDFFAS LQGVIAASSQ SEFSNFYLKV LLSIGDEIAD SLVLKTDVQI QKDNLVKDAI 180
  181 RANDMSDIVS FVYEMMLAYS NAKNYGTVGL CLQVYAQWVS WININLIVNE PCMNLLYSFL 240
  241 QIEELRCAAC ETMTEIVNKK MKPLEKLNLL NILNLNLFFS KSQEQSTDPN FDEHVAKLIN 300
  301 AQGVELVAIK SDPSELSPEL KENCSFQLYN LFPYLIRYLS DDYDETSTAV FPFLSDLLVS 360
  361 LRKESSSKEL SASLKEFLKS LLEAIIKKMK YDESQEWDDD PDSEEEAEFQ EMRKKLKIFQ 420
  421 DTINSIDSSL FSSYMYSAIT SSLSTAATLS PENSWQLIEF ALYETYIFGE GLRGPDAFFN 480
  481 EVDKSPTVLS QILALVTTSQ VCRHPHPLVQ LLYMEILVRY ASFFDYESAA IPALIEYFVG 540
  541 PRGIHNTNER VRPRAWYLFY RFVKSIKKQV VNYTESSLAM LGDLLNISVS PVTDMDAPVP 600
  601 TLNSSIRNSD FNSQLYLFET VGVLISSGNL TPEEQALYCD SLINALIGKA NAALSSDLSA 660
  661 LENIISVYCS LMAIGNFAKG FPARGSEEVA WLASFNKASD EIFLILDRMG FNEDIRGAVR 720
  721 FTSGRIINVV GPDMLPKVPQ LISILLNSID MNELVDVLSF ISQLIHIYKD NMMEITNRML 780
  781 PTLLMRIFSS LSAAPQGTDD AVKQNDLRKS YISFILQLLN KGFGSILFTE ENQVYFDPLI 840
  841 NSILHFANLV GEPATQKSSI ALVSKMVSLW GGKDGIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	1qbkB
Description:	Karyopherin beta2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [878-978]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFENFTLSLT PLCFEMPVNP NFNTRDGQSL VVLGELAGLQ KIILEKLGDI YKSYLVTVYF  60
   61 PTVNFPDVMA SEYLQALSNL DSRSFKQFFQ KFIQALKSGN V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.522879
Match:	1w9cA
Description:	Proteolytic fragment of CRM1 spanning six C-terminal HEAT repeats
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits