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Protein Overview: SPCC736.09c

General Information:
Name(s) found: SPCC736.09c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • TRAX [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][NASLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: [NOT]double-strand break repair via homologous recombination [TASLink to PubMed article]
    [NOT]double-strand break repair via nonhomologous end joining [TASLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEFLSFKN FLQEDQDKRE KIIRLSREIT IQSKRMIFLL HQTSSSDGFP LPKDFDRTSI  60
   61 FEKKIHKELE SLKRELAGLN ADKFSSACTH GLQEYVEAVT FKFWLQTGTL LSCKDSSFRI 120
  121 SINFIDYVLG VCDMTGEIMR FLVTNGSKFS VQQLTQQVKF LRGLHKNCSE IEHLPSKVKS 180
  181 ELQQKLSVME NSISKVEGIC YSKILREADK RYLNLEVDTA TPPEEKRLRS T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..231] PSI-BLAST 55.522879 Testis/brain RNA-binding protein (TB-RBP)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.18404838488611 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.73934887642972 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle