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Protein Overview: SPBC354.10

General Information:
Name(s) found: SPBC354.10 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • RNAPII degradation factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 963 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    Biological Process: transcription-coupled nucleotide-excision repair [ISSLink to PubMed article]
    telomere maintenance [ISSLink to PubMed article]
    response to DNA damage stimulus [ISSLink to PubMed article]
    ubiquitin-dependent protein catabolic process [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENKKFRPK KVGNTEQVSE KQHTDTALNI SQDNKTSSSS AKRGAKGRRG TKGKSGPANS  60
   61 SQTSNIEGSN ALELEFDRDS QLSVLQELFP SWTIDDLSFA LEEADRDLEL TILHITEGHA 120
  121 SKWGEVKKKP IPKTKSKPTS HAPVSDNVSS TFRNATRKSK KPSASKDTSR GVRKSKAGAP 180
  181 SDPSSVHAPS SLEKPAGTGD LPSSEISTKA PASTTVSSSV DPGTINEDSS MKDHTTSNEQ 240
  241 ASVLTSANTA ASTNTNGTAG GTSASAKSTS AADQAVASSK PIKKAWASVA KSKKKVTPAP 300
  301 APAPESEPSK PSIAPSQPSK TNVSAAYEKP AELSSSSVPF PHKSQDSATP ANVETTPSTA 360
  361 TSAPKKSTAP FAINAVKPAP GLSNISSASL PKPSFAKQAA VGSQSSTTSM TTARLLSDRF 420
  421 PVVMPVANTA AIPEKVQVRF GSLTLGGEDK KSTKSSSDNI AQSGPRSSYF PKKTVSPKPE 480
  481 AKKEASKVAE STKIPKKQHT SAYESRAPQS KVPENLKESH VNETPYRGLH DVNLPASGNA 540
  541 SSVSAIPPQV SAQTTIPAAS TSATSGPVVG KQSAGYGGIY SPATHGISPQ PYAGASLIPP 600
  601 STGAAFNNET ASSNAGETTA LPYSSRFMNP VENRSANSPF DNFQHIDHST ELGYASNTSQ 660
  661 QYQQTSHPAY TTMSPIEYGQ AAPAAHYYNE RNQYSQYDNV AGSASNTPDV HSVMHNKVAS 720
  721 SNATSLPAAG TATPSPVVSQ QQPQPYAFPP MYPIPYVSYG YGTMPYNNNK FGQPQQGYMS 780
  781 QSGFNDFPPI FGGHSNVYNR QQPGNVSGMS GTQTSNPINN ATANTSGMTE KAAGHRDSVI 840
  841 GNGGVTGANS MSSTLGGLSS MSGMGRAAPG MFMGNVGSFE NLSANAASPY GLPPQQTPLT 900
  901 NAATQQTTSF QSNANKVNNA NSQPAGFPFN SGASTNAGSN GLGGYNAYNQ SFINRPGGWY 960
  961 GNA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] deduced N/A No confident structure predictions are available.
    2 View Details [182..254] MSA 2.17899 View MSA. No confident structure predictions are available.
    3 View Details [255..426] deduced N/A No confident structure predictions are available.
    4 View Details [427..526] MSA 1.183993 View MSA. No confident structure predictions are available.
    5 View Details [527..702] deduced N/A No confident structure predictions are available.
    6 View Details [703..963] FFAS03 3.07 Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle