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Protein Overview: vps3

General Information:
Name(s) found: vps3 / SPCC364.05 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • GTPase regulator Vps3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 910 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of catalytic activity [ICLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    protein targeting to vacuole [ISSLink to PubMed article]
    Molecular Function: small GTPase regulator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIELHESA IPKELDSPVT TIALYNNHLY FGTEGGDVFL YNFSNFQLNE SPELVKKISL  60
   61 VSKSRVNRIL AMPFLGAVFI HHGSFAEVYK EDDLTQLYPS ISFKGLVEFC HPGQRIDEKS 120
  121 TYLIVTNTHL KLISFQKDGI ILVKNELKYP NIQTARVNGH IVCLVTENSF ELLDILTFDT 180
  181 TPLFPIIKYD SENNGLMYKP MIVLHSNEFL LITGSPKDAI GLFVDSQGNV TRSTLTFSFY 240
  241 PKHVFSTSHY VFAISSSSLQ IIDINTLSLV KSINLKDDES FSFISRLTSV HFCDRQIFSK 300
  301 FSAVNTASTS KTSDTIERAS FSKPSFIFLT NKSWGFGAEA HFMNKLEFSI TIGDIEAPLR 360
  361 RVSKRLRNPK KYGITNDVAY LQSAYLEQIS ALQYWKQGQY ENSLSLLETS KIDPRVVISL 420
  421 YPDLYHSELS YIAFQGVISF RKSILSVDDT VANVLKSNEL FRDTDQYTQR QMIEITKENA 480
  481 YIMLMRYLKN YKKNTSISEY LLSSQRDVML AVEHSLLLLY LNMDDLAAGT KNAKELLESG 540
  541 LTGVEDIKDV LIQKKEYYLL SVLLATVRDH DGVLQTWKKL ITGDYEDRRF NDGLIKIREY 600
  601 LVNDIEPSTF WEFTTWLCKH DATEGTRVLL DKTVSGSISA EDVLEHLDSS QDDVLIDYLV 660
  661 KSNSVTHRAL LLKLCVNKLL GSLLDHNDFK NRLETAIETF RELPCMEKPT YAQYLEQLWG 720
  721 DMSDFSTHLS FYYLCSINLM ENVEEESIDK IKDILFDIHV DNLYLFPQLE HSFYKRKKNY 780
  781 EKALSVLVTN IHDYKGGEAY CLQIDDVYPQ CWCNLLEKCI STGDGCSDFI KELLYRRPFS 840
  841 YTLSYVCEQI PDHWNLNLLA DFLCILQKRN AERLNESQTR LTLEKSLSQN LEELFMAINR 900
  901 RNVALGKNEI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..145] MSA 6.150993 View MSA. No confident structure predictions are available.
    2 View Details [146..312] MSA 4.159991 View MSA. No confident structure predictions are available.
    3 View Details [313..910] FFAS03 2.12 Clathrin heavy chain proximal leg segment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.51063262166696 bayes_pls_golite062009
  • protein transporter activity
    		•  2.17038865096656 bayes_pls_golite062009
  • protein binding
    		•  2.0097220759196 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.68280791022469 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  0.65191473662737 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.347277736469816 bayes_pls_golite062009
  • signal sequence binding
    		•  0.279693431859311 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.118461769548431 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.69

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle