| Protein: | vps3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 910 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps3.
| Description | E-value | Query Range |
Subject Range |
|
|
571.0 | [0..6] | [910..46] |
|
|
564.0 | [0..6] | [910..8] |
|
|
561.0 | [0..6] | [910..8] |
|
|
558.0 | [0..6] | [910..8] |
|
|
557.0 | [0..6] | [910..8] |
|
|
557.0 | [0..6] | [910..8] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MSDIELHESA IPKELDSPVT TIALYNNHLY FGTEGGDVFL YNFSNFQLNE SPELVKKISL 60
61 VSKSRVNRIL AMPFLGAVFI HHGSFAEVYK EDDLTQLYPS ISFKGLVEFC HPGQRIDEKS 120
121 TYLIVTNTHL KLISFQKDGI ILVKN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [146-312] |
1 11 21 31 41 51
| | | | | |
1 ELKYPNIQTA RVNGHIVCLV TENSFELLDI LTFDTTPLFP IIKYDSENNG LMYKPMIVLH 60
61 SNEFLLITGS PKDAIGLFVD SQGNVTRSTL TFSFYPKHVF STSHYVFAIS SSSLQIIDIN 120
121 TLSLVKSINL KDDESFSFIS RLTSVHFCDR QIFSKFSAVN TASTSKT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [313-910] |
1 11 21 31 41 51
| | | | | |
1 SDTIERASFS KPSFIFLTNK SWGFGAEAHF MNKLEFSITI GDIEAPLRRV SKRLRNPKKY 60
61 GITNDVAYLQ SAYLEQISAL QYWKQGQYEN SLSLLETSKI DPRVVISLYP DLYHSELSYI 120
121 AFQGVISFRK SILSVDDTVA NVLKSNELFR DTDQYTQRQM IEITKENAYI MLMRYLKNYK 180
181 KNTSISEYLL SSQRDVMLAV EHSLLLLYLN MDDLAAGTKN AKELLESGLT GVEDIKDVLI 240
241 QKKEYYLLSV LLATVRDHDG VLQTWKKLIT GDYEDRRFND GLIKIREYLV NDIEPSTFWE 300
301 FTTWLCKHDA TEGTRVLLDK TVSGSISAED VLEHLDSSQD DVLIDYLVKS NSVTHRALLL 360
361 KLCVNKLLGS LLDHNDFKNR LETAIETFRE LPCMEKPTYA QYLEQLWGDM SDFSTHLSFY 420
421 YLCSINLMEN VEEESIDKIK DILFDIHVDN LYLFPQLEHS FYKRKKNYEK ALSVLVTNIH 480
481 DYKGGEAYCL QIDDVYPQCW CNLLEKCIST GDGCSDFIKE LLYRRPFSYT LSYVCEQIPD 540
541 HWNLNLLADF LCILQKRNAE RLNESQTRLT LEKSLSQNLE ELFMAINRRN VALGKNEI
|
| Detection Method: | |
| Confidence: | 2.12 |
| Match: | 1b89A |
| Description: | Clathrin heavy chain proximal leg segment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.51063262166696 | bayes_pls_golite062009 |
| protein transporter activity | 2.17038865096656 | bayes_pls_golite062009 |
| protein binding | 2.0097220759196 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.68280791022469 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 0.65191473662737 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.347277736469816 | bayes_pls_golite062009 |
| signal sequence binding | 0.279693431859311 | bayes_pls_golite062009 |
| nucleic acid binding | 0.118461769548431 | bayes_pls_golite062009 |
