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Protein Overview: SPBC16A3.02c

General Information:
Name(s) found: SPBC16A3.02c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • mitochondrial peptidase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 347 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article][ISSLink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    mitochondrial inner membrane [ISSLink to PubMed article]
    Biological Process: protein processing involved in protein targeting to mitochondrion [ISSLink to PubMed article]
    cellular response to stress [IEPLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    peptidase activity [ISSLink to PubMed article]
    alcohol dehydrogenase activity, zinc-dependent [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSETKSEFG TKSAWLYNRT GKPKDVLYLE KGLHIPNPAE LGPYDVLVEV VATSINPLDY  60
   61 KLMNTYQMIA KALFKLPNIP GYDFAGRVLA VGSEVKEFSA TQRVWGCQSF PRAGRQGGSC 120
  121 ATHIVTGDKD VWHLPDGVSF NEGAGFGIAG LTAWEVLVRQ MKVKPGTKLV IEGASGGVGT 180
  181 FAVALAKALE CEVTTISSTE NLDLCKSLGA THTLDYKKDN LVERLADLGP YDFVFDCVND 240
  241 NVLYRASSKF VKPDGAFFGI GGDITLSYVG SRLSRTLRPR VLGGSSHSYY NILLHVDQEM 300
  301 LRDFVDFVMK HNIKTVIDSV YDFEDTVEAF NRLMTHRCKG KVIIKTD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..347] PSI-BLAST 72.154902 CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity
    		•  4.14217990101505 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  2.94416173750168 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  2.27417613545298 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  2.26153457113968 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  2.0836009784049 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  1.22416351603098 bayes_pls_golite062009
  • chaperone binding
    		•  1.04678886151518 bayes_pls_golite062009
  • retinol dehydrogenase activity
    		•  1.04497968922284 bayes_pls_golite062009
  • transporter activity
    		•  0.793769336118517 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.635891484075352 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  0.576163737662951 bayes_pls_golite062009
  • binding
    		•  0.553666136934364 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.51503848775098 bayes_pls_golite062009
  • protein binding
    		•  0.507836099271263 bayes_pls_golite062009
  • coenzyme binding
    		•  0.46570602169425 bayes_pls_golite062009
  • NAD or NADH binding
    		•  0.46286018152257 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.300373102236296 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.239024094835991 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.204320937203153 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.165260811069909 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.0257250793986203 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle