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Protein Overview: ddb1

General Information:
Name(s) found: ddb1 / SPAC17H9.10c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • damaged DNA binding protein Ddb1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1072 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    Ddb1-Wdr21 complex [IDALink to PubMed article]
    Cul4B-RING ubiquitin ligase complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    signalosome [IDALink to PubMed article]
    Ddb1-Ckn1 complex [IDALink to PubMed article]
    Biological Process: regulation of meiotic cell cycle [IGILink to PubMed article]
    regulation of DNA repair [IMPLink to PubMed article]
    regulation of meiosis [IGILink to PubMed article]
    transcription-coupled nucleotide-excision repair [IMPLink to PubMed article]
    cellular response to UV [IMPLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    regulation of S phase of mitotic cell cycle [IMPLink to PubMed article]
    response to DNA damage stimulus [IMPLink to PubMed article]
    premeiotic DNA synthesis [TASLink to PubMed article]
    protein ubiquitination during ubiquitin-dependent protein catabolic process [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYVTYLHKP SSIRNAVFCK FVNASSWNVI VAKVNCLEVY SYENNRLCLI TSANIFAKIV  60
   61 NVKAFKPVSS PTDHIIVATD SFRYFTLFWD ANDNTVSNGI KIQDCSERSL RESQSGPLLL 120
  121 VDPFQRVICL HVYQGLLTII PIFKSKKRFM TSHNNPSLHD NFSVRIQELN VVDIAMLYNS 180
  181 SRPSLAVLYK DSKSIVHLST YKINVREQEI DEDDVVCHDI EEGKLIPSEN GGVFVFGEMY 240
  241 VYYISKDIQV SKLLLTYPIT AFSPSISNDP ETGLDSSIYI VADESGMLYK FKALFTDETV 300
  301 SMELEKLGES SIASCLIALP DNHLFVGSHF NNSVLLQLPS ITKNNHKLEI LQNFVNIAPI 360
  361 SDFIIDDDQT GSSIITCSGA YKDGTLRIIR NSINIENVAL IEMEGIKDFF SVSFRANYDN 420
  421 YIFLSLICET RAIIVSPEGV FSANHDLSCE ESTIFVSTIY GNSQILQITT KEIRLFDGKK 480
  481 LHSWISPMSI TCGSSFADNV CVAVAGGLIL FFEGITEVGR YQCDTEVSSL CFTEENVVYV 540
  541 GLWSADIIML TYCQDGISLT HSLKLTDIPR SIVYSQKYGD DGGTLYVSTN NGYVLMFNFQ 600
  601 NGQVIEHSLR RNQLGVAPII LKHFDSKEKN AIFALGEKPQ LMYYESDKLV ITPLSCTEML 660
  661 NISSYVNPSL GVNMLYCTNS YISLAKMSEI RSLNVQTVSV KGFPRRICSN SLFYFVLCMQ 720
  721 LEESIGTQEQ RLLSFLRVYE KNTLSEIAHH KFNEYEMVES IILMNDDKRV VVGTGFNFPD 780
  781 QDAPDSGRLM VFEMTSDNNI EMQAEHKVQG SVNTLVLYKH LIVAGINASV CIFEYEHGTM 840
  841 HVRNSIRTPT YTIDISVNQD EIIAADLMKS ITVLQFIDDQ LIEVARDYHP LWATSVEILS 900
  901 ERKYFVTEAD GNAVILLRDN VSPQLSDRKK LRWYKKFYLG ELINKTRHCT FIEPQDKSLV 960
  961 TPQLLCATVD GSLMIVGDAG MSNTPLLLQL QDNIRKVIPS FGGLSHKEWK EYRGENETSP1020
 1021 SDLIDGSLIE SILGLREPIL NEIVNGGHEG TKLDISVQDL KSIIENLEKL HP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1072] PSI-BLAST 1000.0 Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle