YRC Public Data Repository - Protein Structure Prediction

Protein:	ddb1
Organism:	Schizosaccharomyces pombe
Length:	1072 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ddb1.

Description	E-value	Query Range	Subject Range
gi\|114663425 - gi\|114663425\|ref\|XP_511081.2\| PREDICTED: similar to KIAA0017 protein [Pan troglodytes]	1138.0	[0..2]	[1068..69]
gi\|40788938 - gi\|40788938\|dbj\|BAA32662.2\| KIAA0017 protein [Homo sapiens]	1131.0	[0..2]	[1068..39]
gi\|73957045 - gi\|73957045\|ref\|XP_536791.2\| PREDICTED: similar to splicing factor 3b, subunit 3 isoform 1 [Canis fa... gi\|149699332 - gi\|149699332\|ref\|XP_001500880.1\| PREDICTED: similar to Splicing factor 3B subunit 3 (Spliceosome-ass...	1129.0	[0..2]	[1068..3]
tr\|G3HAF4\|G3HAF4... - Splicing factor 3B subunit 3 OS=Cricetulus griseus GN=I79_007403 PE=4 SV=1 tr\|E9PT66\|E9PT66_RAT - Protein Sf3b3 OS=Rattus norvegicus GN=Sf3b3 PE=4 SV=2 SF3B3_MOUSE - Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=1 SV=1	1128.0	[0..2]	[1068..3]
SF3B3_PONAB - Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1 SF3B3_PONPY - Splicing factor 3B subunit 3 - Pongo pygmaeus (Orangutan)	1125.0	[0..2]	[1068..3]
gi\|47087273, gi\|... - gi\|47087273\|ref\|NP_998668.1\| splicing factor 3b, subunit 3 [Danio rerio], gi\|28502779\|gb\|AAH47171.1\|...	1117.0	[0..2]	[1068..3]

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Predicted Domain #1

Region A:
Residues: [1-1072]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYVTYLHKP SSIRNAVFCK FVNASSWNVI VAKVNCLEVY SYENNRLCLI TSANIFAKIV  60
   61 NVKAFKPVSS PTDHIIVATD SFRYFTLFWD ANDNTVSNGI KIQDCSERSL RESQSGPLLL 120
  121 VDPFQRVICL HVYQGLLTII PIFKSKKRFM TSHNNPSLHD NFSVRIQELN VVDIAMLYNS 180
  181 SRPSLAVLYK DSKSIVHLST YKINVREQEI DEDDVVCHDI EEGKLIPSEN GGVFVFGEMY 240
  241 VYYISKDIQV SKLLLTYPIT AFSPSISNDP ETGLDSSIYI VADESGMLYK FKALFTDETV 300
  301 SMELEKLGES SIASCLIALP DNHLFVGSHF NNSVLLQLPS ITKNNHKLEI LQNFVNIAPI 360
  361 SDFIIDDDQT GSSIITCSGA YKDGTLRIIR NSINIENVAL IEMEGIKDFF SVSFRANYDN 420
  421 YIFLSLICET RAIIVSPEGV FSANHDLSCE ESTIFVSTIY GNSQILQITT KEIRLFDGKK 480
  481 LHSWISPMSI TCGSSFADNV CVAVAGGLIL FFEGITEVGR YQCDTEVSSL CFTEENVVYV 540
  541 GLWSADIIML TYCQDGISLT HSLKLTDIPR SIVYSQKYGD DGGTLYVSTN NGYVLMFNFQ 600
  601 NGQVIEHSLR RNQLGVAPII LKHFDSKEKN AIFALGEKPQ LMYYESDKLV ITPLSCTEML 660
  661 NISSYVNPSL GVNMLYCTNS YISLAKMSEI RSLNVQTVSV KGFPRRICSN SLFYFVLCMQ 720
  721 LEESIGTQEQ RLLSFLRVYE KNTLSEIAHH KFNEYEMVES IILMNDDKRV VVGTGFNFPD 780
  781 QDAPDSGRLM VFEMTSDNNI EMQAEHKVQG SVNTLVLYKH LIVAGINASV CIFEYEHGTM 840
  841 HVRNSIRTPT YTIDISVNQD EIIAADLMKS ITVLQFIDDQ LIEVARDYHP LWATSVEILS 900
  901 ERKYFVTEAD GNAVILLRDN VSPQLSDRKK LRWYKKFYLG ELINKTRHCT FIEPQDKSLV 960
  961 TPQLLCATVD GSLMIVGDAG MSNTPLLLQL QDNIRKVIPS FGGLSHKEWK EYRGENETSP1020
 1021 SDLIDGSLIE SILGLREPIL NEIVNGGHEG TKLDISVQDL KSIIENLEKL HP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2b5lA
Description:	Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits