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Protein Overview: SPAC6G10.07

General Information:
Name(s) found: SPAC6G10.07 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • nuclear cap-binding complex large subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 780 amino acids

    Gene Ontology:
    Cellular Component: commitment complex [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear cap binding complex [ISSLink to PubMed article]
    perinuclear region of cytoplasm [IEA]
    spindle [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [ISSLink to PubMed article]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYRGSTRP RKRTREGENY GFRPHRGNSQ ELLAARIKKD ITFLADPRGN SVAADDINYV  60
   61 AMSLSREAND PETISTILDC IQTTAFIIPV KIPHLATLII RASLRVPLIL EKAAAYFCLQ 120
  121 YFTNLNSFLY YEAKVDLRML ICMSFALQPG TLKPLFSLLA DAISKETKPS VWGDNFLRII 180
  181 LINLPYFIAA NNDLGKKDFA NEILDQCEIY VRHRKSSITL SNPLSIHDNL SEEELDLLYK 240
  241 QLILSRENDF TFPYISQPWK FFESDFVHIV PVSPSIPEWT FQPTPQQNEL PSFKRFFELF 300
  301 NNFEIRTTPD ASDVAASIFR DISVDVINHL EFNRVEAAQV LTDLDVYFTY KTFALRGTPV 360
  361 NELPNLDPSE SRWKAEDIIV EAVLGELLGS QNTTYKPVYY HSLLIECCRI APKILAPTFG 420
  421 RVIRLMYTMS SDLPLQTLDR FIDWFSHHLS NFNFHWKWNE WIPDVELDDL HPKKVFMRET 480
  481 ITRELILSYY TRISDSLPEE LRCLLGEQPS GPNFVYENET HPLYQQSSQI IEALRLHKPL 540
  541 EELDIILQSE EIQNSETSAV RLVMSCAYSL GSRSFSHALN VFEKHLNTLK HFSRKSLDSE 600
  601 IEVVDELFSF WKLQPFNAVM WLDKMLNYSI ISITSIIEWL IKQDVTIWSR SYTWSLVNTT 660
  661 FNKLAARLRR SVSNKEDSSL INEANEEKEI VTNLLLSALR ALISENAENI WVSHWLNLML 720
  721 KYVESNFLSV KKDTIEEANE PVQENTSEEQ EDTKMQPVDA VDEQPSENNQ TAADATNEEK 780
  781

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..677] PSI-BLAST 1000.0 CBP80, 80KDa nuclear cap-binding protein
    2 View Details [678..780] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle