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Protein Overview: SPBC36B7.04

General Information:
Name(s) found: SPBC36B7.04 [Sanger Pombe]
Description(s) found:
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  • gi|9967699|emb|CAC05725.1| tRNA dihydrouridine synthase Dus1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|74638589|sp|Q9HGN6.1|DUS1_SCHPO RecName: Full=tRNA-dihydrouridine synthase 1 [NCBI NR]
  • gi|19112778|ref|NP_595986.1| tRNA dihydrouridine synthase Dus1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • tRNA dihydrouridine synthase Dus1 [Sanger Pombe]
  • tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe GN=dus1 PE=2 SV=1 [Swiss-Prot]
  • WEAK SIMILARITY TO AZOSPIRILLUM BRASILENSE NIFR3 PROTEIN; SIMILAR TO S. CEREVISIAE YML080W; UPF0034 FAMILY: Q9HGN6; [pompepVF.fasta]
  • PROTEIN WITH WEAK SIMILARITY TO AZOSPIRILLUM BRASILENSE NIFR3 PROTEIN; YEAST YML080W HOMOLOG; UPF0034 DOMAIN: Q9HGN6; [pompepV13]
  • Protein with weak similarity to Azospirillum brasilense nifR3 protein, yeast YML080W homolog, UPF0034 domain [pompep4896]
  • |||putative dihydrouridine synthase [pompepnew.fasta]
  • SPBC36B7.04 protein [4896.FASTAC]
  • |||dihydrouridine synthase (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • protein with weak similarity to Azospirillum brasilense nifR3 protein; yeast YML080W homolog; UPF0034 domain [Schizosaccharomyces pombe]gi|9967699|emb|CAC05725.1| SPBC36B7.04 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • |||dihydrouridine synthase |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q9HGN6) Protein with weak similarity to Azospirillum brasilense nifR3 protein, yeast YML080W homolog, UPF0034 domain [pompep4896_normal_reversed]
  • |||tRNA dihydrouridine synthase Dus1 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC36B7.04 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC36B7.04 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 399 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    mitochondrion [IDALink to PubMed article]
    Biological Process: tRNA modification [ISSLink to PubMed article]
    Molecular Function: tRNA dihydrouridine synthase activity [ISSLink to PubMed article]
    FAD binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKKLHGRD FYNKIGRPKR ILAPMVDQSE LPWRILARRS GADLCYSPMF HSRLFGESED  60
   61 YRNKVFSTRT IPEERPLIIQ FCGNDPEIML KAAKIAAPYC DAVDVNLGCP QGIAKKGKYG 120
  121 SFLQENWNLI ESIITKLHTE LSIPVTAKIR IFPDPQKTLD YAKMILKAGA SILAVHGRLR 180
  181 EQKGHFTGIA DWEQIQMLRK NLPSETVLFA NGNILHAQDI DRCIKYTGVD GVLSAEGSLY 240
  241 NPRIFLPPSS PLMTLYPRID DMCEEYLNII REFKLESDYS SLSAIKGHLF KLMRPLLSIH 300
  301 TDIRSKLAQG CTPRDFETFP PVVAMLRKRL LECEEKGEIN EDKDVKESVK DSMGYPVIPW 360
  361 WRVQPYIRPL EVPLVTKRKP VEVTADEGPV KKKVNASVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..399] PSI-BLAST 53.0 Crystal structure of a putative flavin oxidoreductase with flavin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.94749091175302 bayes_pls_golite062009
  • tRNA dihydrouridine synthase activity
    		•  1.94490879164338 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.03692680161964 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  0.876786102965635 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.80115790656025 bayes_pls_golite062009
  • binding
    		•  0.68572942532795 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle