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Protein Overview: SPCC1393.05

General Information:
Name(s) found: SPCC1393.05 [Sanger Pombe]
Description(s) found:
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  • pir||T40953 hypothetical protein SPCC1393.05 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582991|sp|O94717.1|YCF5_SCHPO RecName: Full=Uncharacterized protein C1393.05 [NCBI NR]
  • gi|4468724|emb|CAB38161.1| RNA-silencing factor Ers1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075463|ref|NP_587963.1| sequence orphan [Schizosaccharomyces pombe] [NCBI NR]
  • sequence orphan [Sanger Pombe]
  • Uncharacterized protein C1393.05 OS=Schizosaccharomyces pombe GN=SPCC1393.05 PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SEQUENCE ORPHAN: O94717; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPCC1393.05 protein [4896.FASTAC]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|4468724|emb|CAB38161.1| SPCC1393.05 [Schizosaccharomyces pombe]gi|7491797|pir||T40953 hypothetical protein SPCC1393.05 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • (O94717) Hypothetical protein [pompep4896_normal_reversed]
  • |ers1||RNA-silencing factor Ers1|Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPCC1393.05 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPCC1393.05 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 956 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: chromatin silencing at centromere [IMPLink to PubMed article]
    regulation of histone H3-K9 methylation [IMPLink to PubMed article]
    RITS complex localization [IMPLink to PubMed article]
    production of siRNA involved in RNA interference [IDALink to PubMed article][IMPLink to PubMed article]
    sphingolipid biosynthetic process [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVSANNQS GFFKFYIDTA LLLNAEFISS FTNCINSEYN GKVKISYSSS SQQFKVIVYE  60
   61 EHKREAFSLF EEIVQKLKRE STVYKKPRLD IHPFGQLHYD FTTLLNFQRY LDLGYGIEDV 120
  121 KIKENEDIVK SKVGKKPTSS DFYIPCLIKP KIITPFEWEG NFKQVIYSPT VYNGSFKRLF 180
  181 YLPDNNDLLK EFAHATNTKY KASLKDNKIV VLANNDQDIN AMLEKMKHIE NLVSQKVYEY 240
  241 PEETLVYAGK IAPCQLKFLK LKFENEILYT AMHTTSIFKS VFNILGSFYT MRLLRNKHDG 300
  301 DSYELVPVFA KNPSKTPPCN DNFKIFSDDI KLIGCKIFAG VSLNFSSPKP AHRFYELNKT 360
  361 SSNLSIPVLQ KPSNFHSSST ELSDNSIHQG RRAVDPVVNQ NNPSNFEEMI MNKLNKLPTI 420
  421 DKQILGTSSL THFQDKTTAI EHSINKSNSK QPPRFKFQLP PRPTSNTLPL EPEEELVTRY 480
  481 SVSSDGNTVD EAITKQSQTF QLVNSNEFNE VNANDVHKSL RQNCAKLDFD DSKSKNLLSV 540
  541 ECLELDKGSD CSTPKSGSLT PSIDMKFLRL QDEKMDDLGD NYYTILMSSN PVSSYGVGSL 600
  601 YLFQPKIVCS EKYINHEEID NMNLKSLHRW LSRSLHVLQS FSGEIELNLE FGVILYPNIS 660
  661 SDVSACSHGF MNIYKDLNLP RSYFADCITK SVSNIDSLLN TPVKILFGRT EYTYPLIEHE 720
  721 VLDSKNYFVF KGSLLFTDDK RNKTEDSTVF FSMICSSKLD QFAFYKDSKQ SSTCTINFPL 780
  781 ALWDSRLRIE TKVPLNDAIL TEFSKSIRFR NVNKDLLLVF GNMEDRVIIH SVTRINENSV 840
  841 PFNKNLLPHS LEFILKCSKV KSYDISPSSI NSKEAFVCLD RSKESKPIES CFSLSIQSVY 900
  901 MQSQFKYNNS IRAGETAPWK LANKQFIGGA ITENVSDLYT AAIIMVNQLG GIHPTI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..318] deduced N/A No confident structure predictions are available.
    2 View Details [319..553] deduced N/A No confident structure predictions are available.
    3 View Details [554..742] deduced N/A No confident structure predictions are available.
    4 View Details [743..871] deduced N/A No confident structure predictions are available.
    5 View Details [872..956] deduced N/A Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle