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Protein Overview: pmc5

General Information:
Name(s) found: pmc5 / SPAC1002.15c [Sanger Pombe]
Description(s) found:
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  • gi|6689272|emb|CAB65615.1| mediator complex subunit Pmc5 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|62287137|sp|Q9US45.1|MED6_SCHPO RecName: Full=Mediator of RNA polymerase II transcription subunit 6; AltName: Full=Mediator complex subunit 6; AltName: Full=RNA polymerase II mediator complex protein pmc5 [NCBI NR]
  • gi|19114415|ref|NP_593503.1| mediator complex subunit Pmc5 [Schizosaccharomyces pombe] [NCBI NR]
  • mediator complex subunit Pmc5 [Sanger Pombe]
  • Mediator of RNA polymerase II transcription subunit 6 OS=Schizosaccharomyces pombe GN=med6 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE COMPONENT OF RNA POLYMERASE II HOLOENZYME AND MEDIATOR SUBCOMPLEX; RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR: Q9US45; [pompepVF.fasta]
  • Putative component of RNA polymerase II holoenzyme and mediator subcomplex, RNA polymerase transcriptional regulation mediator [pompep4896]
  • |pmc5||RNA polymerase II holoenzyme component (PMID 10625684) [pompepnew.fasta]
  • RNA polymerase II holoenzyme component (PMID 10625684); mediator complex subunit (PMID 10625684); essential (PMID 10625684); involved in regulating RNA polymerase II activity; similar to S. cerevisiae YHR058C [4896.FASTAC]
  • |pmc5||RNA polymerase II holoenzyme component (PMID 10625684)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • RNA polymerase II holoenzyme component (PMID 10625684); mediator complex subunit (PMID 10625684); essential (PMID 10625684); involved in regulating RNA polymerase II activity; similar to S. cerevisiae YHR058C [Schizosaccharomyces pombe]gi|19114415|ref|NP [nrdb_11152004_Chlamydomonas]
  • |pmc5|med6|mediator complex subunit |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q9US45) Putative component of RNA polymerase II holoenzyme and mediator subcomplex, RNA polymerase transcriptional regulation mediator [pompep4896_normal_reversed]
  • |pmc5|med6|mediator complex subunit Pmc5|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • RNA polymerase II mediator complex subunit 6 (RNA polymerase II mediator complex protein pmc5) [nr-271106-contam.fasta]
  • SPAC1002.15c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC1002.15c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Mediator of RNA polymerase II transcription subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=med6 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 216 amino acids

    Gene Ontology:
    Cellular Component: mediator complex [IDALink to PubMed article][NAS]
    Biological Process: gene-specific transcription from RNA polymerase II promoter [ICLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [IEA]
    Molecular Function: RNA polymerase II transcription mediator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGAPPSVD LTSIQWRMPE WVQSMGGLRT ENVLEYFSQS PFYSHKSNNE MLKMQSQFNA  60
   61 LDLGDLNSQL KRLTGIQFVI IHERPPFLWV IQKQNRLNEN EVKPLTVYFV CNENIYMAPN 120
  121 AYTLLATRML NATYCFQKAL TKIEKFPQYN PQEGYTYPKL SNDNLEVDHS NTNEPADENK 180
  181 NQSIENADYS FSPEDFSVVR AFMQSLHSSK EAPDVK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..216] Pfam 67.769551 No description for PF04934.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle