YRC Public Data Repository - Protein Structure Prediction

Protein:	pmc5
Organism:	Schizosaccharomyces pombe
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmc5.

Description	E-value	Query Range	Subject Range
gi\|74152816 - gi\|74152816\|dbj\|BAE42663.1\| unnamed protein product [Mus musculus]	260.0	[0..10]	[194..9]
gi\|62896733 - gi\|62896733\|dbj\|BAD96307.1\| mediator of RNA polymerase II transcription, subunit 6 homolog [Homo sap...	256.0	[0..10]	[194..9]
gi\|109084155 - gi\|109084155\|ref\|XP_001082932.1\| PREDICTED: mediator of RNA polymerase II transcription, subunit 6 h... CCDS9805.1_1 - null	256.0	[0..10]	[194..9]
gi\|30583885, gi\|... - gi\|60652819\|gb\|AAX29104.1\| mediator of RNA polymerase II transcription subunit 6-like [synthetic con...	255.0	[0..10]	[194..9]
gi\|114653730, gi... - gi\|114653732\|ref\|XP_510038.2\| PREDICTED: hypothetical protein LOC453004 isoform 5 [Pan troglodytes],...	255.0	[0..10]	[194..9]
gi\|165970989, gi... - gi\|34867365\|ref\|XP_216759.2\| PREDICTED: similar to RNA polymerase transcriptional regulation mediato...	255.0	[0..10]	[194..9]
gi\|73964257 - gi\|73964257\|ref\|XP_547885.2\| PREDICTED: similar to RNA polymerase transcriptional regulation mediato... tr\|M3WI76\|M3WI76... - Mediator of RNA polymerase II transcription subunit 6 OS=Felis catus GN=MED6 PE=3 SV=1	255.0	[0..10]	[194..9]
MED6_BOVIN - Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1	254.0	[0..10]	[194..9]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGAPPSVD LTSIQWRMPE WVQSMGGLRT ENVLEYFSQS PFYSHKSNNE MLKMQSQFNA  60
   61 LDLGDLNSQL KRLTGIQFVI IHERPPFLWV IQKQNRLNEN EVKPLTVYFV CNENIYMAPN 120
  121 AYTLLATRML NATYCFQKAL TKIEKFPQYN PQEGYTYPKL SNDNLEVDHS NTNEPADENK 180
  181 NQSIENADYS FSPEDFSVVR AFMQSLHSSK EAPDVK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.769551
Match:	PF04934.5
Description:	No description for PF04934.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits