YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBP8B7.15c

General Information:
Name(s) found: SPBP8B7.15c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • ubiquitin-protein ligase E3 RBBP6 family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 482 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    mRNA cleavage and polyadenylation specificity factor complex [ISS]
    Biological Process: mRNA polyadenylation [ISS]
    mRNA cleavage [ISS]
    protein ubiquitination [RCALink to PubMed article]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVIYYKFK SQKDPSRITF DGTIGMSVFD VKREIIMQKK LGNGLDFDLL LYNANSNEEY  60
   61 DDDTFIIPRS TSVIVRRVPA QKSGKGTAAR YVSGAPKTTG ARSDSVKRPV PMLQKKAPIT 120
  121 SGESNINKSP SSSEDAAIQQ MFQVSSDQWR ETQDKMASAT PIYKPNQRRI AASVPDKPPP 180
  181 PGYICYRCGQ KGHWIQACPT NADPNYDGKP RVKRTTGIPR SFLKNVERPA EGDAANIMIN 240
  241 AEGDYVVVQP DVASWETYQS RKAALTANDV YKMQPPNISL ACTLCKKLAR NACRTPCCDK 300
  301 LFCEECIQTA LLDSDFECPN CHRKDVLLDT LNPDYQKQRE IEAVVKSVLG SNSKNSDKVG 360
  361 TSDDNNTPMS EKRKREDDDA NGPNKFAARS SAVFSKATAE PAFKSAMAIP DMPSMPHVQG 420
  421 FPAPFPPFMM PGLPQMPPMM MNAIAGQVYH NNRNPPRTNS RPSNASVPPP SSLHKNPPTK 480
  481 TN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] PSI-BLAST 32.39794 Solution NMR structure of the DWNN domain from human RBBP6
    2 View Details [81..164] PSI-BLAST 27.522879 HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN
    3 View Details [165..333] PSI-BLAST 10.0 Cbl; N-terminal domain of cbl (N-cbl); CBL
    4 View Details [334..398] PSI-BLAST 10.39794 No description for 2cklB was found.
    5 View Details [399..482] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.04588712677166 bayes_pls_golite062009
  • DNA binding
    		•  2.53317408686316 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.33828046499668 bayes_pls_golite062009
  • binding
    		•  2.07015157850093 bayes_pls_golite062009
  • transcription factor activity
    		•  2.0090791129794 bayes_pls_golite062009
  • transcription activator activity
    		•  0.68790059848359 bayes_pls_golite062009
  • protein binding
    		•  0.214213089360409 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  2.53440610777794 bayes_pls_golite062009
  • protein binding
    		•  1.44943024889856 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.21787427710133 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.989403795332031 bayes_pls_golite062009
  • DNA binding
    		•  0.919230170522211 bayes_pls_golite062009
  • transcription factor activity
    		•  0.381732656457041 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle