| Protein: | SPBP8B7.15c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 482 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP8B7.15c.
| Description | E-value | Query Range |
Subject Range |
|
|
256.0 | [0..3] | [478..2] |
|
|
255.0 | [0..3] | [478..2] |
|
|
254.0 | [0..3] | [478..2] |
|
|
252.0 | [0..3] | [478..2] |
|
|
252.0 | [0..3] | [478..2] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MSGVIYYKFK SQKDPSRITF DGTIGMSVFD VKREIIMQKK LGNGLDFDLL LYNANSNEEY 60
61 DDDTFIIPRS TSVIVRRVPA
|
| Detection Method: |  |
| Confidence: | 32.39794 |
| Match: | 2c7hA |
| Description: | Solution NMR structure of the DWNN domain from human RBBP6 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [81-164] |
1 11 21 31 41 51
| | | | | |
1 QKSGKGTAAR YVSGAPKTTG ARSDSVKRPV PMLQKKAPIT SGESNINKSP SSSEDAAIQQ 60
61 MFQVSSDQWR ETQDKMASAT PIYK
|
| Detection Method: | |
| Confidence: | 27.522879 |
| Match: | 1bajA |
| Description: | HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.04588712677166 | bayes_pls_golite062009 |
| DNA binding | 2.53317408686316 | bayes_pls_golite062009 |
| nucleic acid binding | 2.33828046499668 | bayes_pls_golite062009 |
| binding | 2.07015157850093 | bayes_pls_golite062009 |
| transcription factor activity | 2.0090791129794 | bayes_pls_golite062009 |
| transcription activator activity | 0.68790059848359 | bayes_pls_golite062009 |
| protein binding | 0.214213089360409 | bayes_pls_golite062009 |
|
Region A: Residues: [165-333] |
1 11 21 31 41 51
| | | | | |
1 PNQRRIAASV PDKPPPPGYI CYRCGQKGHW IQACPTNADP NYDGKPRVKR TTGIPRSFLK 60
61 NVERPAEGDA ANIMINAEGD YVVVQPDVAS WETYQSRKAA LTANDVYKMQ PPNISLACTL 120
121 CKKLARNACR TPCCDKLFCE ECIQTALLDS DFECPNCHRK DVLLDTLNP
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 1fbvA |
| Description: | Cbl; N-terminal domain of cbl (N-cbl); CBL |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.53440610777794 | bayes_pls_golite062009 |
| protein binding | 1.44943024889856 | bayes_pls_golite062009 |
| transcription regulator activity | 1.21787427710133 | bayes_pls_golite062009 |
| nucleic acid binding | 0.989403795332031 | bayes_pls_golite062009 |
| DNA binding | 0.919230170522211 | bayes_pls_golite062009 |
| transcription factor activity | 0.381732656457041 | bayes_pls_golite062009 |
|
Region A: Residues: [334-398] |
1 11 21 31 41 51
| | | | | |
1 DYQKQREIEA VVKSVLGSNS KNSDKVGTSD DNNTPMSEKR KREDDDANGP NKFAARSSAV 60
61 FSKAT
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 2cklB |
| Description: | No description for 2cklB was found. |
|
Region A: Residues: [399-482] |
1 11 21 31 41 51
| | | | | |
1 AEPAFKSAMA IPDMPSMPHV QGFPAPFPPF MMPGLPQMPP MMMNAIAGQV YHNNRNPPRT 60
61 NSRPSNASVP PPSSLHKNPP TKTN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
