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Protein Overview: SPBC13E7.08c

General Information:
Name(s) found: SPBC13E7.08c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RNA polymerase II associated Paf1 complex [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 429 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Cdc73/Paf1 complex [ISSLink to PubMed article]
    Biological Process: regulation of RNA elongation [ICLink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: RNA polymerase II transcription elongation factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEDIRN GQEEDDLFSE NEDNHTSQQD ELINGHIEND SETAVSDDGL FSNTEEATEA  60
   61 PEADVPVKKV LEVAVPNFKS PASASNDVFH AHIPNFLSVE QTPYDPEQYA AEAEADAALL 120
  121 EHDAHWGQRI KHKVDNTVRW RLGPSGSYQS NAQIVQWSDG SYSLRIGNDI YDTQNKLISQ 180
  181 PTFVTASHEA QHLLRVQTSF KSSFTFLPSA INTATRSKLP SMRLTTVQVP SRSVQEIIIE 240
  241 KDPELLKRQA EKYEEERSRA RRRLEKRKQL NNYQNGTGEE EEDYSSFYGP RSTYSEQNEI 300
  301 IDSDRMDRLK RIKQEGAGQY RGYNKDLEEN EEDDLGDFIA EEEEEEEQEE EQEEDEEDEE 360
  361 EVGAGSDIKG FDADKEASVA RATINKYEDD EVIPSAVETD RSETVTETSV GDGSVQRRVK 420
  421 RRIVESDSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] deduced N/A No confident structure predictions are available.
    2 View Details [96..429] PSI-BLAST 6.221849 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle