YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC13E7.08c
Organism:	Schizosaccharomyces pombe
Length:	429 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC13E7.08c.

Description	E-value	Query Range	Subject Range
gi\|7549210 - gi\|7549210\|gb\|AAF63787.1\|AF142406_1 200 kDa antigen p200 [Babesia bigemina]	167.0	[0..3]	[429..235]
gi\|27374250 - gi\|27374250\|gb\|AAO01008.1\| CG10887-PA [Drosophila erecta]	154.0	[0..7]	[312..338]
gi\|9916, gi\|627059 - gi\|9916\|emb\|CAA39663.1\| liver stage antigen [Plasmodium falciparum], pir\|\|A45592 liver stage antigen...	143.0	[0..7]	[428..1146]
gi\|124802937, gi... - gi\|23508159\|ref\|NP_700829.1\| liver stage antigen, putative [Plasmodium falciparum 3D7], gi\|23495223\|...	139.0	[0..7]	[428..501]
Atu-PA - The gene Another transcription unit is referred to in FlyBase by the symbol Dmel\Atu (CG1433, FBgn00... gi\|220945978, gi... - gi\|220952606\|gb\|ACL88846.1\| Atu-PA [synthetic construct], gi\|220945978\|gb\|ACL85532.1\| Atu-PA [synthe...	137.0	[0..48]	[368..357]
GL50803_4883 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=hypothetical protein \| location=GLCHR02:216520-... gi\|157433633, gi... - gi\|71078504\|ref\|XP_771761.1\| hypothetical protein GLP_546_74871_79250 [Giardia lamblia ATCC 50803], ... ctg02_33\|4883\|Hy... - protein	134.0	[0..170]	[394..337]
CE05166 - Yeast LEO1 protein like status:Confirmed UniProt:Q17431 protein_id:CAA97406.1	131.0	[0..19]	[350..99]
gi\|118352773 - gi\|118352773\|ref\|XP_001009657.1\| hypothetical protein TTHERM_00155290 [Tetrahymena thermophila] gi\|118352773, gi... - gi\|89291424\|gb\|EAR89412.1\| hypothetical protein TTHERM_00155290 [Tetrahymena thermophila SB210], gi\|...	128.0	[0..1]	[428..546]
gi\|62360137, gi\|... - gi\|70801193\|gb\|AAZ11101.1\| hypothetical protein, conserved [Trypanosoma brucei], gi\|62360137\|gb\|AAX8... gi\|71753647, gi\|... - gi\|72388472\|ref\|XP_844660.1\| hypothetical protein [Trypanosoma brucei TREU927], gi\|71753647\|ref\|XP_8...	126.0	[0..4]	[428..487]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEDIRN GQEEDDLFSE NEDNHTSQQD ELINGHIEND SETAVSDDGL FSNTEEATEA  60
   61 PEADVPVKKV LEVAVPNFKS PASASNDVFH AHIPN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLSVEQTPYD PEQYAAEAEA DAALLEHDAH WGQRIKHKVD NTVRWRLGPS GSYQSNAQIV  60
   61 QWSDGSYSLR IGNDIYDTQN KLISQPTFVT ASHEAQHLLR VQTSFKSSFT FLPSAINTAT 120
  121 RSKLPSMRLT TVQVPSRSVQ EIIIEKDPEL LKRQAEKYEE ERSRARRRLE KRKQLNNYQN 180
  181 GTGEEEEDYS SFYGPRSTYS EQNEIIDSDR MDRLKRIKQE GAGQYRGYNK DLEENEEDDL 240
  241 GDFIAEEEEE EEQEEEQEED EEDEEEVGAG SDIKGFDADK EASVARATIN KYEDDEVIPS 300
  301 AVETDRSETV TETSVGDGSV QRRVKRRIVE SDSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.221849
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits