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Protein Overview: SPBC25H2.11c

General Information:
Name(s) found: SPBC25H2.11c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • bromodomain protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 979 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    SAGA complex [ISSLink to PubMed article]
    Biological Process: chromatin remodeling [ICLink to PubMed article]
    transcription from RNA polymerase II promoter [ICLink to PubMed article]
    histone acetylation [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNFEDSKS LDEPVLHDIA IALLKNDYWS LYLSPEQKRK YISILNDTLL WNRFINVIEW  60
   61 DKLCDEKDSN GSNDDEEDDL DITTLFRCRC MIFDAKINPA LFDLSSTSSG SIEHVDHQNI 120
  121 SLEASLAEEE ERKKGDAKKS EATGRQLFDD DDFDESDAED SSKATITLDL QKDKSLRKSI 180
  181 IDLKSVDIDD MDTSGFAAIE SNKALSNISF NYVYYTLEND SENINEVKKF EDEEDTSTPN 240
  241 TSSFQNNSSS LDLSDNLSYL LQYLEGNRSK INATDADVKQ LLSDVKKNKS KWANDQRIGQ 300
  301 EELYEAAEKV VLELRSYTEH SLAFLTKVSK RDAPDYYTVI KEPMDLGTIL RNLKNLHYNS 360
  361 KKEFVHDLML IWSNCFLYNS HPDHPLRVHA QFMKDKSLEL INLIPDIVIQ SRKDYDDSLI 420
  421 EAELESDEES TAETSKHVTS KKTSSRGGQT QQAVEVHTDA NSPEENNTPV TKKEVETSKP 480
  481 PAVSGSTPPV NEAAVIESSN TLEKEPLSDV ATEYWKIKTK DIRESHILNN RRILKSLQFI 540
  541 ETELPMIRKP TAMSAFIDRE VAYGSIDCLP MDKGDFEPIM KLDTTPLLEY DVGSGVPMTA 600
  601 GSVLETESEE DLYFRDYSLF EINRNTPGVP SLMYKNIAKM QEIRKLCNKI QTVRQLQLPQ 660
  661 PFYYEHHKSH VPFANNEPIL LDIPQNYDNM SSFKPLAHDV LKKLCTIILF HAGFESFQMG 720
  721 ALDALTEIAA DYMAKMGAVM DQYLIYGKDK SQQEIVGQTL GELGVDDVND LISYVYHDVE 780
  781 RQSVKLLEIH QRLQRHFVEL LRPALSERND EEAIFNQNGE SFVTGNFSYE TGDDFFGLRE 840
  841 LGLDRELGLD SLSVPLHLLQ SRLRSNMSWQ PEATIKGDQE YAPPPKYPPI TAESISNEIG 900
  901 LIQGFLKKNL EEFGLDELLE DEDIRPRSKP PRPRLPPNGK ITTGRKRIAS SVFLNQSLRK 960
  961 KRCLKENEQG TEVTTLPEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ste13 No Comments Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] deduced N/A No confident structure predictions are available.
    2 View Details [129..275] deduced N/A No confident structure predictions are available.
    3 View Details [276..574] PSI-BLAST 33.522879 TAFII250 double bromodomain module
    4 View Details [575..656] deduced N/A No confident structure predictions are available.
    5 View Details [657..765] FFAS03 1.03 Histone H4
    6 View Details [766..979] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle