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Protein Overview: SPBC14F5.10c

General Information:
Name(s) found: SPBC14F5.10c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • ubiquitin-protein ligase E3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 486 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: proteolysis [IEA]
    cellular response to stress [IEPLink to PubMed article]
    protein ubiquitination [ISSLink to PubMed article]
    Molecular Function: ubiquitin-protein ligase activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    ATP-dependent peptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKERPGVLF NKIRSYFICP GCNCLPDWPV TLPCGGTVCR KCFRNAYSSE SSGKVSPSRC  60
   61 CFYNHKKPHY SVETEVKDVI ISKVVELIKT TEFQISQQSL VPLELKEEIC HDDCLSSSPP 120
  121 CTSALTEITL LPPTFHNLIP SSSSYETAVA EFLHMEDLLQ ENVSRELECQ ICFGMLYDPV 180
  181 VSPCGHTFCG PCLMQALTQS PQCPTCRFGL PSPVVLEHAK SHSITTFLRD FYPDNWLERQ 240
  241 KSWEEEKEQE SWLPLFISML AYPRMPTFLH IFELRYHIMI KKCLETSKRF CIAMPLRARS 300
  301 DGHNEHRELR NARGQRLFCS EYGTILEIIQ VEPLIDGRSL VEARGSYCVR IIDFRADGLF 360
  361 PRVKIEKHYD TPLRATPLQF PEPEYLLMYG NLSNEELVER IDAFYMNARR TYVHWVVPLI 420
  421 DIKMEARQSI ADLSYKITNL LPISELEKTR ILQVDNPTDR LVLVLIWLTQ LQESWWYRVG 480
  481 SACTIA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..217] PSI-BLAST 4.522879 Cbl; N-terminal domain of cbl (N-cbl); CBL
    2 View Details [218..307] PSI-BLAST 9.045757 Crystal structure of N-terminal domain of E.Coli Lon Protease
    3 View Details [308..486] PSI-BLAST 4.39794 Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  2.02733015563095 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.9108446888071 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.68066936925185 bayes_pls_golite062009
  • binding
    		•  1.63304177604131 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.975842082218581 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.452350351194157 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.0513824052595904 bayes_pls_golite062009
  • protein kinase activity
    		•  0.00152905451182617 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  2.28821309090923 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  2.04895483965868 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.29346372793394 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.704219777466206 bayes_pls_golite062009
  • binding
    		•  0.262184906686291 bayes_pls_golite062009
  • protein binding
    		•  0.258248504526829 bayes_pls_golite062009
  • catalytic activity
    		•  0.147263815852997 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle