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Protein Overview: SPCC4G3.18

General Information:
Name(s) found: SPCC4G3.18 [Sanger Pombe]
Description(s) found:
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  • pir||T41358 hypothetical protein SPCC4G3.18 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74583175|sp|P87243.1|YC0I_SCHPO RecName: Full=Uncharacterized protein C4G3.18 [NCBI NR]
  • gi|2213561|emb|CAB09765.1| ribosome biogenesis protein Rix1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075320|ref|NP_587820.1| conserved fungal family [Schizosaccharomyces pombe] [NCBI NR]
  • conserved fungal family [Sanger Pombe]
  • Uncharacterized protein C4G3.18 OS=Schizosaccharomyces pombe GN=SPCC4G3.18 PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SEQUENCE ORPHAN: P87243; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPCC4G3.18 protein [4896.FASTAC]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2213561|emb|CAB09765.1| SPCC4G3.18 [Schizosaccharomyces pombe]gi|7491919|pir||T41358 hypothetical protein SPCC4G3.18 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • (P87243) Hypothetical protein [pompep4896_normal_reversed]
  • |||ribosome biogenesis protein Rix1 |Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPCC4G3.18 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPCC4G3.18 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |rix1||ribosome biogenesis protein Rix1 |Schizosaccharomyces pombe|chr 3|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 828 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISS]
    spindle pole body [IDALink to PubMed article]
    Biological Process: ribosomal subunit export from nucleus [ISS]
    rRNA processing [ISS]
    ribosomal large subunit assembly [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLLERGSL PLVKSWLAIT FANEEDLPFQ VPQIADILVH QKCIERLGTS ENALSVRKNW  60
   61 CTSLTKMLQS KDFRIRWSAI ILIHCTISQS WDCLVEHGAT WAKLLIALLN RPETPKTLEI 120
  121 AMITVSKMFS STVGRPAVTR ELVTPNLPTF VNNCLRIAES GKCLCTVCSC LYQGIISHSP 180
  181 TFRPFVSSIR NICIKILDGE EVVPSSLQKK AAVLYASLYR CVGKGNFEDY WKQSIISILK 240
  241 EYHLTLDFLF QFVIEPQTYP TREENLMFPK LKGHYEETYQ KALHRCRTLN LILISFLSTK 300
  301 TDKIVLLPIN ALKDLIQRVY TVQLSLPVKS VESSVQALLF MVLPHLHTLV NELTLKLFVV 360
  361 IPPAIILSFD SYLDSLNDCL LSESTHTGVL CSSLKLLSKF LDVTHMNVPL SKYENIVTLV 420
  421 LEYLANSSKG LASKSIEFSK NRGHSQKKRK TLSESQAGDT LMSSEESHQL YDSDVMDCCF 480
  481 SFLASILTHS IALPRLLRTK IDLCTLQISL SNPTSTVLIS MHNLLLASIL SPGDSQAVIV 540
  541 PHAIRIISGP LGLVHPDPLV ASHARSSMQT IESLIHPRFP PLQKHLSPSE FENTFESRFE 600
  601 PVSLENQSHI SPPQVDSQSE YKESSILAPS NPPFETESIT DSTEIEGIKE SFASTDTGLQ 660
  661 NNSTATSENK RSESELTMSN VLSNEGDRNE EGSEINSSQP STINHGTDHI NIVSENKETT 720
  721 VSLLHGDVEV EETTNVALNN SQDTETKFTA IDVDFVDRPT SVVSSQIENI NGDENGNTTS 780
  781 SVVETFEKTT DVVDEKTTSI NVEGNGEDDE EEDNISLPSI NLESDSDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..260] deduced N/A No confident structure predictions are available.
    2 View Details [261..335] deduced N/A No confident structure predictions are available.
    3 View Details [336..551] deduced N/A No confident structure predictions are available.
    4 View Details [552..828] FFAS03 1.36 30S subunit


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle