YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC106.13

General Information:
Name(s) found: SPBC106.13 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • conserved eukaryotic protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 404 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    GID complex [ISS]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [ISS]
    negative regulation of gluconeogenesis [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFRPEQQYI LEKPGILLSF EQLRINFKHI LRHLEHESHV INSTLTTLIS QENASMDEKI  60
   61 EKIDSLLSRV STVKKKMKHL HDCEALFIKQ TKSRLLFMNR LQGIRDMESA DFLDWSRVRL 120
  121 NRLVADYMMA NGYHGAAALL CKDSQLENLV DLGIYKRYQL IHDSILQQEL KEVLSWCSEH 180
  181 RAILKKNNST LELEVRLQRF IELIKSKKLC QAIAFAKAHF GTWANEHPAR LQLAAALLAF 240
  241 PEFTNGSPYS LLLSDDRWEY LASLFTSNFT AVHNIPSVPL LHALLAAGLS SLKTPLCYLD 300
  301 ANDDNPLALQ SQTVKQCPVC TPCLNDLGKA LPYAHITQSA IVDSLTGEGL DSDNCPVAFP 360
  361 NGRVYGIQSL ISWNEANGTR EGFLRDPYSG KEFPFQLLRK VYVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] MSA 3.098995 View MSA. Confident ab initio structure predictions are available.
    2 View Details [102..206] MSA 15.207995 View MSA. Confident ab initio structure predictions are available.
    3 View Details [207..299] MSA 5.212996 View MSA. Confident ab initio structure predictions are available.
    4 View Details [300..404] PSI-BLAST 4.0 Solution Structure of the RING domain of the Tripartite motif protein 32


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle