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Protein Overview: SPAC25B8.04c

General Information:
Name(s) found: SPAC25B8.04c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • mitochondrial splicing suppressor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 378 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [ISSLink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Biological Process: positive regulation of translation [ISSLink to PubMed article]
    mitochondrial translation [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLKNLFKK KSPTHELFHP LSRSPLTALR RRSEHIKQVY RCPISGKSVE YECPESGFPT  60
   61 HCNRTHWEQD KIHQSLIPKL RQINEDYHDL ARPNPLPELL KLPGPMEEDE VVSLLSWDSF 120
  121 FYTRDFPKFQ SSRTARHITS LLTYPMSIGA ILHKNSPYNL KNGLTPQGLQ SLTALRYMLH 180
  181 RPLSAQSTDP RPTRIFVLGA TKECSLPPSI WLQGLNFLFP GRLFQLHFIG PEVVVPSKQP 240
  241 NLPSPLSLHF HQDYYHNLHR VGAFEPFDPY YDTFFLPMPL ISHPLYSSSW IPTLHDLVST 300
  301 RCSVWLTSPS SQRTTKDLEV LNNVLKDSIE PLLLPTVNKF ASLGWSVDDS NLHEVYHANQ 360
  361 EVFGFRALYY NVQNVSKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] FFAS03 2.42 No description for 2d8qA was found.
    2 View Details [144..236] deduced N/A No confident structure predictions are available.
    3 View Details [237..378] MSA 1.018963 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.61453871150569 bayes_pls_golite062009
  • protein binding
    		•  1.5709406243849 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.48028380835426 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.28933740675944 bayes_pls_golite062009
  • DNA binding
    		•  1.20928788057658 bayes_pls_golite062009
  • transcription activator activity
    		•  1.13950949876397 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle