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Protein Overview: SPBC646.10c

General Information:
Name(s) found: SPBC646.10c [Sanger Pombe]
Description(s) found:
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  • pir||T40586 nucleolar protein involved in pre-rRNA processing - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74627019|sp|O94514.1|NOP56_SCHPO RecName: Full=Nucleolar protein 56; AltName: Full=Ribosome biosynthesis protein sik1 [NCBI NR]
  • gi|4160346|emb|CAA22814.1| U3 snoRNP protein Nop56 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112160|ref|NP_595368.1| U3 snoRNP protein Nop56 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • U3 snoRNP protein Nop56 [Sanger Pombe]
  • Ribosome biosynthesis protein sik1 OS=Schizosaccharomyces pombe GN=sik1 PE=2 SV=1 [Swiss-Prot]
  • Nucleolar protein 56 OS=Schizosaccharomyces pombe GN=nop56 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE U3 SNORNP COMPONENT; PUTATIVE COMPONENT OF BOX C/D SNORNPS; INVOLVED IN 2'-O-METHYLATION OF RIBOSOMAL RNAS; SIMILAR TO S. CEREVISIAE SIK1: O94514; [pompepVF.fasta]
  • PUTATIVE U3 SNORNP COMPLEX COMPONENT; PUTATIVE COMPONENT OF BOX C/D SNORNPS; INVOLVED IN 2'-O-METHYLATION OF RIBOSOMAL RNAS; SIMILAR TO S. CEREVISIAE SIK1: O94514; [pompepV13]
  • Probable involvement in pre rRNA processing, putative sik1 protein homolog [pompep4896]
  • |||putative ribonucleoprotein (RNP) complex (PMID 12068309) [pompepnew.fasta]
  • SPBC646.10c protein [4896.FASTAC]
  • |||ribonucleoprotein (RNP) complex (predicted) (PMID 12068309)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative U3 snoRNP component; putative component of box C/D snoRNPs; involved in 2'-O-methylation of ribosomal RNAs; similar to S. cerevisiae SIK1 [Schizosaccharomyces pombe]gi|4160346|emb|CAA22814.1| ribonucleoprotein (RNP) complex (predicted) (PMID 120 [nrdb_11152004_Chlamydomonas]
  • |||ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O94514) Probable involvement in pre rRNA processing, putative sik1 protein homolog [pompep4896_normal_reversed]
  • |||U3 snoRNP protein Nop56 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC646.10c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • processome protein [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 497 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    small nuclear ribonucleoprotein complex [ISSLink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADYLLYESA TGYSLFDVVG ADQIAAKTKE VQLSLQDISK FGKVVQLRSF IPFKNAAHAL  60
   61 ENANDISEGV LNDFLKNFLE LNLPKASKKK KVSLGVQDKN LATSIKSEID AIECDTSELT 120
  121 QDLLRGIRFH GDKLLKQLSP GDFERAQLGL GHSYSRAKVK FNVNRNDNMI IQAIAILDQL 180
  181 DKDINTFAMR MKEWYSWHFP ELSKIVGDNY KYAVIVTLVG DKTTINDEML HDLAAVVDDD 240
  241 KDIAQSIINA GKVSMGQDIS EIDLENILSF AERVIKLSNY RKQLHNYLVQ KMNVVAPNLA 300
  301 ELIGEMVGAR LISHAGSLTN LSKCPASTVQ ILGAEKALFR ALKTRGNTPK YGIIYHSSFI 360
  361 GKAGAKNKGR ISRFLANKCS IASRIDNFSD APTTAFGQVL RRQVEERLNF FDTGVAPTRN 420
  421 SIAMAEAYEK ALSSVNIDGD EEVDIDVEET VETISEKPSK KEKKDKKEKK KEKSKKKRSA 480
  481 DDASEEVKKS KKKKKSH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..416] PSI-BLAST 101.0 No description for 2nnwA was found.
    2 View Details [417..497] FFAS03 1.02 HUMAN METHIONINE AMINOPEPTIDASE 2 COMPLEXED WITH TNP-470


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle