YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC646.10c
Organism:	Schizosaccharomyces pombe
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC646.10c.

Description	E-value	Query Range	Subject Range
gi\|114680995 - gi\|114680995\|ref\|XP_514472.2\| PREDICTED: nucleolar protein 5A [Pan troglodytes]	573.0	[0..3]	[441..189]
gi\|125774945, gi... - gi\|54638465\|gb\|EAL27867.1\| GA12569-PA [Drosophila pseudoobscura], gi\|125774945\|ref\|XP_001358724.1\| G...	570.0	[0..3]	[440..4]
gi\|47215203 - gi\|47215203\|emb\|CAG01410.1\| unnamed protein product [Tetraodon nigroviridis]	563.0	[0..3]	[437..4]
gi\|77748265 - gi\|77748265\|gb\|AAI06207.1\| XNop56 protein [Xenopus laevis]	558.0	[0..3]	[489..4]
gi\|125543860 - gi\|125543860\|gb\|EAY89999.1\| hypothetical protein OsI_011232 [Oryza sativa (indica cultivar-group)] gi\|108708133, gi... - gi\|215706465\|dbj\|BAG93321.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|125586246\|gb\|...	558.0	[0..3]	[486..1]
gi\|110741586 - gi\|110741586\|dbj\|BAE98741.1\| putative nucleolar protein [Arabidopsis thaliana]	558.0	[0..1]	[440..1]
gi\|41054986, gi\|... - gi\|41054986\|ref\|NP_957511.1\| NOP56 ribonucleoprotein homolog [Danio rerio], gi\|37682169\|gb\|AAQ98011....	557.0	[0..3]	[433..4]

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Predicted Domain #1

Region A:
Residues: [1-416]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADYLLYESA TGYSLFDVVG ADQIAAKTKE VQLSLQDISK FGKVVQLRSF IPFKNAAHAL  60
   61 ENANDISEGV LNDFLKNFLE LNLPKASKKK KVSLGVQDKN LATSIKSEID AIECDTSELT 120
  121 QDLLRGIRFH GDKLLKQLSP GDFERAQLGL GHSYSRAKVK FNVNRNDNMI IQAIAILDQL 180
  181 DKDINTFAMR MKEWYSWHFP ELSKIVGDNY KYAVIVTLVG DKTTINDEML HDLAAVVDDD 240
  241 KDIAQSIINA GKVSMGQDIS EIDLENILSF AERVIKLSNY RKQLHNYLVQ KMNVVAPNLA 300
  301 ELIGEMVGAR LISHAGSLTN LSKCPASTVQ ILGAEKALFR ALKTRGNTPK YGIIYHSSFI 360
  361 GKAGAKNKGR ISRFLANKCS IASRIDNFSD APTTAFGQVL RRQVEERLNF FDTGVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	2nnwA
Description:	No description for 2nnwA was found.

Predicted Domain #2

Region A:
Residues: [417-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTRNSIAMAE AYEKALSSVN IDGDEEVDID VEETVETISE KPSKKEKKDK KEKKKEKSKK  60
   61 KRSADDASEE VKKSKKKKKS H

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	1b6aA
Description:	HUMAN METHIONINE AMINOPEPTIDASE 2 COMPLEXED WITH TNP-470
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits