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Protein Overview: SPCC23B6.04c

General Information:
Name(s) found: SPCC23B6.04c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • sec14 cytosolic factor family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1008 amino acids

    Gene Ontology:
    Cellular Component: extrinsic to membrane [IEA]
    Biological Process: phospholipid transport [ISSLink to PubMed article]
    sterol biosynthetic process [ISS]
    Molecular Function: phosphatidylinositol transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDSEHHHHG HNGFSKFLHK LGFGKSKGKS HKSNTSSIHE RENTAAKGPA SNVRPARPNV  60
   61 STSSTSNEVR KSVPVGNPTV HTKTGSSSSP ASKMRNTVNL QHIQAANQKT RNAEGERKVA 120
  121 QRRVQSDKAE ANDAAMSSSA PTVDVSEGNS AAEPKITPDD SDTPRLNVDM NDKINVDEAA 180
  181 AKSDSKLNVD QINSTTESEK RVEKVNPNIA NNPLKSPDAV AYSSETVSDE KQPTEHPVSA 240
  241 NVPAKSEKAV CDENTKISLT NTEHYKFHSL RGDVEVVVGD LERDGRDTSL GDASVNEAAK 300
  301 ETDVDSSRFI SDEKAVTEDA MKTEHASNAP LTDERHFQFH SSEGDIEGIV GTMQRQRQSV 360
  361 SSYDTIVPSQ FYKQKVVQNS PPSLLSTDNK IPESGSDHPS SQDNSSKASL VENSQTQSST 420
  421 PRKPLPTTTS PKVNPEPHSE SISDTRPSTP RKVPPSTVPK MNPKLQGGNS VTAPSTPSKV 480
  481 LPAMSPKVAP KFQGGRSSTA PSTPNKVLPA ASAKAAPKLQ EKAASFDIPN KSTIISTKST 540
  541 VASPIKANEN SPALKSKASF EFPKELDPDG TWNAPIPYPD ANCPMAPTYR NLTSEQEEMY 600
  601 EEVLKYCLEL KEIPVASNSS KKTDLIELER LWLTRECILR YLRATKWHVS NAKKRIVDTL 660
  661 VWRRHFGVNN MDPDEIQEEN ATGKQVLLGY DKDGRPCLYL YPARQNTKTS PLQIRHLVFS 720
  721 LECAIDLMPP GVETLALLIN FKSSSNRSNP SVGQGKEVLN ILQTHYCERL GRALVINIPW 780
  781 AVWGFFKLIS PFIDPITREK LKFNEPLDRY VPKDQLDSNF GGSLHFEYHH EKYWPQLVEL 840
  841 CKSRRLGILE KWRKMGSKIG TSEWDLKGGE EYVELMQQYV RPSLTNRSSS PTVTPTVNTD 900
  901 RQPKTLTNSA DELSPQKRRV ENPKPVVKDE GPVSIVEDEE STPVVTKKED SIPVAQSTKA 960
  961 DAGLDAENDL LPKSGSGVSE TPAFSHARDV STASFSDAVS FITADSIE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..332] FFAS03 1.36 30S subunit
    2 View Details [333..568] MSA 5.241997 View MSA. No confident structure predictions are available.
    3 View Details [569..859] PSI-BLAST 68.69897 PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P FROM SACCHAROMYCES CEREVISIAE
    4 View Details [860..1008] PSI-BLAST 4.39794 Solution structure of the MSP domain of RIKEN cDNA 6030424E15

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • phospholipid transporter activity
    		•  4.82372291869245 bayes_pls_golite062009
  • lipid transporter activity
    		•  3.44932625048477 bayes_pls_golite062009
  • phosphatidylinositol transporter activity
    		•  3.08477039249457 bayes_pls_golite062009
  • binding
    		•  2.05690048809626 bayes_pls_golite062009
  • vitamin binding
    		•  0.87942237566918 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.658164745879483 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.265815679858875 bayes_pls_golite062009
  • protein binding
    		•  0.132818074687599 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle