| Protein: | SPCC23B6.04c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1008 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC23B6.04c.
| Description | E-value | Query Range |
Subject Range |
|
|
407.0 | [0..593] | [978..4] |
|
|
379.0 | [0..554] | [962..24] |
|
|
369.0 | [0..557] | [977..21] |
|
Region A: Residues: [1-332] |
1 11 21 31 41 51
| | | | | |
1 MKDSEHHHHG HNGFSKFLHK LGFGKSKGKS HKSNTSSIHE RENTAAKGPA SNVRPARPNV 60
61 STSSTSNEVR KSVPVGNPTV HTKTGSSSSP ASKMRNTVNL QHIQAANQKT RNAEGERKVA 120
121 QRRVQSDKAE ANDAAMSSSA PTVDVSEGNS AAEPKITPDD SDTPRLNVDM NDKINVDEAA 180
181 AKSDSKLNVD QINSTTESEK RVEKVNPNIA NNPLKSPDAV AYSSETVSDE KQPTEHPVSA 240
241 NVPAKSEKAV CDENTKISLT NTEHYKFHSL RGDVEVVVGD LERDGRDTSL GDASVNEAAK 300
301 ETDVDSSRFI SDEKAVTEDA MKTEHASNAP LT
|
| Detection Method: |  |
| Confidence: | 1.36 |
| Match: | 1dv4A |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [333-568] |
1 11 21 31 41 51
| | | | | |
1 DERHFQFHSS EGDIEGIVGT MQRQRQSVSS YDTIVPSQFY KQKVVQNSPP SLLSTDNKIP 60
61 ESGSDHPSSQ DNSSKASLVE NSQTQSSTPR KPLPTTTSPK VNPEPHSESI SDTRPSTPRK 120
121 VPPSTVPKMN PKLQGGNSVT APSTPSKVLP AMSPKVAPKF QGGRSSTAPS TPNKVLPAAS 180
181 AKAAPKLQEK AASFDIPNKS TIISTKSTVA SPIKANENSP ALKSKASFEF PKELDP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [569-859] |
1 11 21 31 41 51
| | | | | |
1 DGTWNAPIPY PDANCPMAPT YRNLTSEQEE MYEEVLKYCL ELKEIPVASN SSKKTDLIEL 60
61 ERLWLTRECI LRYLRATKWH VSNAKKRIVD TLVWRRHFGV NNMDPDEIQE ENATGKQVLL 120
121 GYDKDGRPCL YLYPARQNTK TSPLQIRHLV FSLECAIDLM PPGVETLALL INFKSSSNRS 180
181 NPSVGQGKEV LNILQTHYCE RLGRALVINI PWAVWGFFKL ISPFIDPITR EKLKFNEPLD 240
241 RYVPKDQLDS NFGGSLHFEY HHEKYWPQLV ELCKSRRLGI LEKWRKMGSK I
|
| Detection Method: | |
| Confidence: | 68.69897 |
| Match: | 1auaA |
| Description: | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P FROM SACCHAROMYCES CEREVISIAE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phospholipid transporter activity | 4.82372291869245 | bayes_pls_golite062009 |
| lipid transporter activity | 3.44932625048477 | bayes_pls_golite062009 |
| phosphatidylinositol transporter activity | 3.08477039249457 | bayes_pls_golite062009 |
| binding | 2.05690048809626 | bayes_pls_golite062009 |
| vitamin binding | 0.87942237566918 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.658164745879483 | bayes_pls_golite062009 |
| transcription regulator activity | 0.265815679858875 | bayes_pls_golite062009 |
| protein binding | 0.132818074687599 | bayes_pls_golite062009 |
|
Region A: Residues: [860-1008] |
1 11 21 31 41 51
| | | | | |
1 GTSEWDLKGG EEYVELMQQY VRPSLTNRSS SPTVTPTVNT DRQPKTLTNS ADELSPQKRR 60
61 VENPKPVVKD EGPVSIVEDE ESTPVVTKKE DSIPVAQSTK ADAGLDAEND LLPKSGSGVS 120
121 ETPAFSHARD VSTASFSDAV SFITADSIE
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 1wicA |
| Description: | Solution structure of the MSP domain of RIKEN cDNA 6030424E15 |
Matching Structure (courtesy of the PDB): |
|
