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Protein Overview: sfr1

General Information:
Name(s) found: sfr1 / SPBC28F2.07 [Sanger Pombe]
Description(s) found:
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  • pir||T40050 hypothetical protein SPBC28F2.07 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|6018691|emb|CAB57936.1| Swi five-dependent recombination repair protein Sfr1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|33517448|gb|AAQ19997.1| DNA repair protein Dds20 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|31338843|dbj|BAC77073.1| Sfr1 protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|21264167|sp|Q9USV1.1|SFR1_SCHPO RecName: Full=Swi5-dependent recombination DNA repair protein 1; AltName: Full=DNA repair protein dds20; AltName: Full=Meiotically up-regulated gene 13 protein [NCBI NR]
  • gi|19112460|ref|NP_595668.1| Swi five-dependent recombination repair protein Sfr1 [Schizosaccharomyces pombe] [NCBI NR]
  • Swi five-dependent recombination repair protein Sfr1 [Sanger Pombe]
  • Swi5-dependent recombination DNA repair protein 1 OS=Schizosaccharomyces pombe GN=sfr1 PE=1 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; LOW SIMILARY TO THE C TERMINAL REGION OF S. POMBE SWI2: Q9USV1; [pompepVF.fasta]
  • HYPOTHETICAL PROTEIN WITH LOW SIMILARITY TO THE C TERMINAL REGION OF S. POMBE SWI2: Q9USV1; [pompepV13]
  • Hypothetical protein C28F2.07 in chromosome II [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • Swi5-dependent recombination DNA repair protein 1 (DNA repair protein dds20) [4896.FASTAC]
  • |sfr1|dds20|involved in DNA repair (PMID 14663140)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • DNA repair protein Dds20 [Schizosaccharomyces pombe]gi|19112460|ref|NP_595668.1| hypothetical protein [Schizosaccharomyces pombe]gi|6018691|emb|CAB57936.1| SPBC28F2.07 [Schizosaccharomyces pombe]gi|21264167|sp|Q9USV1|SFR1_SCHPO Swi5-dependent recombina [nrdb_11152004_Chlamydomonas]
  • |sfr1|dds20|Swi five-dependent recombination repair protein|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q9USV1) Hypothetical protein C28F2.07 in chromosome II [pompep4896_normal_reversed]
  • |sfr1|dds20, mug13|Swi five-dependent recombination repair protein Sfr1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC28F2.07 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC28F2.07 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Sfr1 protein [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • DNA repair protein Dds20 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Swi5-dependent recombination DNA repair protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfr1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Swi5-Sfr1 complex [IDALink to PubMed article]
    Biological Process: meiotic joint molecule formation [TASLink to PubMed article]
    meiotic chromosome segregation [IMPLink to PubMed article]
    double-strand break repair via homologous recombination [IGILink to PubMed article]
    intra-S DNA damage checkpoint [IDALink to PubMed article]
    DNA recombinase assembly [IC]
    [NOT]mating type switching [IMPLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    protein homodimerization activity [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTINSELN ENATSQCKED LKVSLSESDL RDSQGQLGIE NPPKCNNSGN HSDNLGFIEQ  60
   61 SETVHPENEK ALTPDLRDTK IHTSLPITTP FSKKRAREAK NILLKPFKSP LRQTASPQVA 120
  121 DTNLKPSLAV TNLNSDETNT SSEPVTSPLR TTPNSIKRQK RLFKSPISNC LNPKSDPEIT 180
  181 QLLSRRLKLE KEVRNLQEQL ITAETARKVE AKNEDKDLQT LIQKWKNAAQ QAAEVLFKPM 240
  241 AERIRLAGGV TQSFRIEEGE NKGQIQEVRT EFTMSMFLNQ FGVPVHLMSF DEENGDWKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] FFAS03 0.965 Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
    2 View Details [150..299] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle